1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGGAGAGGTGGAGAGCTCATGCAAAACTGAATTACCATCTTTCAGGCCTTCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAGgtaaaaaaaaaacatcataaatatgcattacaaaaaccccaaaagccctccattattctcaggtaagattaggtgatcatattgaatatatgcatgggaa...
species | Vitis vinifera |
transcript | Vv19s0014g01780.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAG AATTTTGGCAAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGGAAGCTACAEST: gi|30134000|gb|CB919338.1|CB919338
genomic: TCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAGgtaaaaaaaa ... tggtcttcagAATTTTGGCAAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGGAAGCTACA
EST: TCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAG AATTTTGGCAAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGGAAGCTACAEST: gi|161720173|gb|FC065488.1|FC065488
genomic: TCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAGgtaaaaaaaa ... tggtcttcagAATTTTGGCAAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGGAAGCTACA
EST: TCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAG AATTTTGGCAAACCGGCAATCAGCT
genomic: TCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAGgtaaaaaaaa ... tggtcttcagAATTTTGGCAAACCGGCAATCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGAGAGGTGGAGAGCTCATGCAAAACTGAATTACCATCTTTCAGGCCTTCCACCGCCTCTAACGGCGATTCCATCATCGATCCAAAGCGGGTTAAGAGgtaaaaaaaaaacatcataaatatgcattacaaaaaccccaaaagccctccattattctcaggtaagattaggtgatcatattgaatatatgcatgggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggtaa