1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGATCCGGAAGAAGCCTCTCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgtattcccctttctctttctttccccattttttttcgttgtttttttcgaagaaatctttggagggtagaatgagaatcgaaaaatattttttattttcc...
species | Vitis vinifera |
transcript | Vv19s0014g01260.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGT CAAGTGCAGGGACAAATAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAEST: gi|110408619|gb|EC974256.1|EC974256
genomic: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgtattcccct ... tctgctgcagCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAA
EST: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGT CAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAA
genomic: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgtattcccct ... tctgctgcagCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATCCGGAAGAAGCCTCTCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgtattcccctttctctttctttccccattttttttcgttgtttttttcgaagaaatctttggagggtagaatgagaatcgaaaaatattttttattttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata