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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGCCTGTGTGTGCAAGAGGTGGAGAGATATTACCAGAGAGGTCGTGAGGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttttttcctttttgatttttaaaattttagttttgtgtatttgttacggctttggttgatcttctttggttttgatgcgtttgatttatttcc...

Basic information

species Vitis vinifera
transcript Vv19s0014g01250.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055037|gb|FQ440376.1|FQ440376
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351032270|gb|FQ461523.1|FQ461523
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|71872640|gb|DT021695.1|DT021695
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|161706598|gb|FC057216.1|FC057216
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATG
EST: gi|351056453|gb|FQ454314.1|FQ454314
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|352798883|gb|FQ480732.1|FQ480732
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|161713648|gb|FC062550.1|FC062550
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|110708836|gb|EE086829.1|EE086829
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|352790032|gb|FQ479642.1|FQ479642
EST:     GGTCTCGTCTCAATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|349817991|gb|FQ407980.1|FQ407980
EST:     GGTCTCGTCTCGATAGTGGCCAGACCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|349832891|gb|FQ423013.1|FQ423013
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|77584477|gb|DV221307.1|DV221307
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351022168|gb|FQ438753.1|FQ438753
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351038773|gb|FQ464639.1|FQ464639
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAGACAG                         CCAGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351032812|gb|FQ461701.1|FQ461701
EST:     GGCCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|161718362|gb|FC066304.1|FC066304
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351053975|gb|FQ441741.1|FQ441741
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351051579|gb|FQ450131.1|FQ450131
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|349811397|gb|FQ407623.1|FQ407623
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCCTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351029875|gb|FQ427715.1|FQ427715
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|110730771|gb|EE108231.1|EE108231
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|30251916|gb|CB969649.1|CB969649
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|161718790|gb|FC067326.1|FC067326
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|349807495|gb|FQ401488.1|FQ401488
EST:     GGTCTCGTCTCGATAGTGGCCAGACCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|349817493|gb|FQ407283.1|FQ407283
EST:     GGTCTCGTCTCGATAGTGGCCAGACCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|37186503|gb|CF605856.1|CF605856
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|110714004|gb|EE090419.1|EE090419
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|351054882|gb|FQ440221.1|FQ440221
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|352782688|gb|FQ476768.1|FQ476768
EST:     GGTCTCGTCTCGATAGTGGCCAGATCCCTTTCCCTTCTTGCCTCANACCG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|161721414|gb|FC070778.1|FC070778
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|294966769|gb|GW837788.1|GW837788
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|352786855|gb|FQ481230.1|FQ481230
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
EST: gi|161711450|gb|FC061215.1|FC061215
EST:     GTCTCGTCTCGATAGTGGCCAGATCACTTTTCCCTTCTTGCCTCCAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAG
genomic: GTCTCGTCTCGATAGTGGCCAGATCACTTT-CCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAG
EST: gi|71871589|gb|DT020644.1|DT020644
EST:     GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAG                         CCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG
genomic: GGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttt ... ttaaatgcagCCGGGACCACGCAACTCTGAACATCAATGTCTTATAAAACGGAACAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCGCCTGTGTGTGCAAGAGGTGGAGAGATATTACCAGAGAGGTCGTGAGGTCTCGTCTCGATAGTGGCCAGATCACTTTCCCTTCTTGCCTCAAACAGgttcaatttttttcctttttgatttttaaaattttagttttgtgtatttgttacggctttggttgatcttctttggttttgatgcgtttgatttatttcc

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