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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTCTCCGACGGGgtagggtccgattctcatctcaatttctgttcaccgctttcctttcattccatttgtctggttttgtttcgattgtttctggatctgtagctcctttctc...

Basic information

species Vitis vinifera
transcript Vv19s0014g01020.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688222|gb|EE066526.1|EE066526
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|161707141|gb|FC055564.1|FC055564
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|161718407|gb|FC066312.1|FC066312
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|161711947|gb|FC059564.1|FC059564
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTACATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|110698206|gb|EE075492.1|EE075492
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|110692118|gb|EE070996.1|EE070996
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|110687041|gb|EE064103.1|EE064103
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|110409186|gb|EC974845.1|EC974845
EST:     GGTTCTCTCCGACGGG                         GTTGAACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|110365093|gb|EC928838.1|EC928838
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|110698349|gb|EE075761.1|EE075761
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|37183757|gb|CF603111.1|CF603111
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
EST: gi|161721208|gb|FC070714.1|FC070714
EST:     GGTTCTCTCCGACGGG                         GTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG
genomic: GGTTCTCTCCGACGGGgtagggtccg ... gctggtgcagGTTGGACCTGTTTAATTTAGGCTAAATAAGATGGGAGGAGGATTTAGGGTG