1 5' 3' | 2 5' 3' | 3 5' 3' |
CAAATGGAGCTGCTGAGGCGCCAGATCTCAGTCTACGCCACCATTTGTGAGCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGgtcttttaccctctctcttactcccacttgacttttttttttttgtgtgtgttaattgcttctgggtttgcattgattctccatttaatgctgtttgctt...
species | Vitis vinifera |
transcript | Vv18s0122g01140.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTG GGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTCEST: gi|37189648|gb|CF608997.1|CF608997
genomic: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGgtcttttacc ... tcttgtttagGGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTC
EST: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTG GGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTCEST: gi|110689373|gb|EE065541.1|EE065541
genomic: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGgtcttttacc ... tcttgtttagGGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTC
EST: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTG GGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTCEST: gi|110699267|gb|EE076126.1|EE076126
genomic: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGgtcttttacc ... tcttgtttagGGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTC
EST: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTG GGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTC
genomic: GCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGgtcttttacc ... tcttgtttagGGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATGGAGCTGCTGAGGCGCCAGATCTCAGTCTACGCCACCATTTGTGAGCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGgtcttttaccctctctcttactcccacttgacttttttttttttgtgtgtgttaattgcttctgggtttgcattgattctccatttaatgctgtttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccac