Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTCTACCTCCATGGCTGCTATTCCTGCTCCCAAGTGGGCCCAGAAGACCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcctcccaatctttttcttttctttctttttcctcctctggattgaaaaacctcttctttagtccatctgaaattccacctccctagacttccg...

Basic information

species Vitis vinifera
transcript Vv18s0122g00190.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387568|gb|EC952248.1|EC952248
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|110398891|gb|EC965370.1|EC965370
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|351014365|gb|FQ437367.1|FQ437367
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|110386869|gb|EC951501.1|EC951501
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|71857030|gb|DT006085.1|DT006085
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTTGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|110732164|gb|EE107221.1|EE107221
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|26257553|gb|CA808616.1|CA808616
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|28959343|gb|CB339672.1|CB339672
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCCTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|26258319|gb|CA809382.1|CA809382
EST:     TGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGGCCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: TGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|254916144|gb|GR904002.1|GR904002
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|28959153|gb|CB339578.1|CB339578
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCCTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|30301103|gb|CB977897.1|CB977897
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|26257283|gb|CA808346.1|CA808346
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|71856841|gb|DT005896.1|DT005896
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTTGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|110426779|gb|EC993200.1|EC993200
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|110711159|gb|EE087374.1|EE087374
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|110425239|gb|EC991621.1|EC991621
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|110379372|gb|EC944560.1|EC944560
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|30301035|gb|CB977829.1|CB977829
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|28960863|gb|CB340439.1|CB340439
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|28959155|gb|CB339579.1|CB339579
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|28959315|gb|CB339658.1|CB339658
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
EST: gi|27584720|gb|CB007415.1|CB007415
EST:     CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCAAAG                         ATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT
genomic: CCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcct ... tcttcattagATATTGAAGGAAATTGGGCAAGACCTGTCAGGATTCAAATGTGGCCTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATTCTACCTCCATGGCTGCTATTCCTGCTCCCAAGTGGGCCCAGAAGACCATCACTCTTCCTCCTCAGAGGCGAGGCTGTCACCACATCACCCCTAAGgtatcatcctcccaatctttttcttttctttctttttcctcctctggattgaaaaacctcttctttagtccatctgaaattccacctccctagacttccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccct