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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTTTCTCGATCACTTTCTCAAATACTCCAAACACAAGCCTATGGGTTCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttcttcctttaattcctttcgtttggttgccgagaaaattttagaaaaccttgtttttttttttttttttttcatattcttgatttggttgctg...

Basic information

species Vitis vinifera
transcript Vv18s0117g00150.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407717|gb|CF213344.1|CF213344
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCAACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|110712411|gb|EE090004.1|EE090004
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|161711381|gb|FC059938.1|FC059938
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|110719186|gb|EE096875.1|EE096875
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACGACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|71873142|gb|DT022197.1|DT022197
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|161721778|gb|FC071127.1|FC071127
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|161706369|gb|FC055475.1|FC055475
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|37188093|gb|CF607444.1|CF607444
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|351030617|gb|FQ437043.1|FQ437043
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|351027170|gb|FQ440038.1|FQ440038
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|110710940|gb|EE087573.1|EE087573
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACGACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|351014903|gb|FQ438103.1|FQ438103
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|351039455|gb|FQ461322.1|FQ461322
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: gi|110707058|gb|EE083127.1|EE083127
EST:     TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG                         GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAATTTTCTCGATCACTTTCTCAAATACTCCAAACACAAGCCTATGGGTTCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttcttcctttaattcctttcgtttggttgccgagaaaattttagaaaaccttgtttttttttttttttttttcatattcttgatttggttgctg

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaa