Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTAGTTATCTTGTTGTTCATCCTCCACAAGCTTGCTCAAGTGATCCCCCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttgcttatcacatttccgctattgaatttgcttgctacgttttgctgttgtacgtctaataattgggttttttttttttttttaattcacaac...

Basic information

species Vitis vinifera
transcript Vv18s0089g01420.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g01420.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM5G815808_T01 (Zea mays), 5'ss of exon 1
--CCATTAGTTATCTTGTTGTTCATCCTCCACAAGCTTGCTCAAGTGATCCCCCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgt---------------------ttcttttgcttatcacatttccgctattgaat-ttgcttg----ctacgttttgctgttg-------tacgtctaataattgggttttttttttttttttaattcacaac-------------------------------
   | |         ||    | | |  || |  ||  |   |   |  || || || || || || |||||||||||||||||| | || |||||||||||||                       | ||     |||| | |      ||  ||  || | ||    | |||     | ||||        ||| |   |  | | | || |   | |   |      || |                                
GGACGTGGCGAGGGATGCGCGTGAACTACCTC--GCCAGAGGACAGGGGCCGCCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggccttgtccgtccgcccccttgatcgatcataatcttctgatgaaaccttacctgggctcaacgcgcgaccgttggtgcacgcacgccatgtgctcgagcttgtgcctctgcatgcgccaaccattgctgggaacattgatcaactcgcttggtag

upper sequence: Vv18s0089g01420.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G35660.1 (Glycine max), 5'ss of exon 1
-CCATTAGTTATCTTGTTGTTCATCCTCCACAAGCTTGCTCAAGTGATCCCCCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttgcttatcacatttccgc--tattgaatttgcttgctacgttttgctgttgtacgtctaataattgggttttttttttttttttaattcacaac
 | | |   | |||| |  ||| |||||  ||          ||  | || ||| |  | |||||||| |||||||| ||||||||| |||||||||||||||   ||      || || | | |         | | |  |  || | |  || || |||      |   |     ||||  |||||| |||  |  | |  
ACTACTTTGTTTCTTCTGATTC-TCCTCAGCAGTTGCATGGCAGCCACCCTCCTCTCTTACTTGTTCATGGCTTCGGTGCCTCCATTCCTCACTGGCGCAGgtaatttgccaccataacttgttcatatctccaagtcttatcacttc-tcatgttgctgtgttctcatccacccatttttgcttttttcttttttagatat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376208|gb|EC941257.1|EC941257
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|294964820|gb|GW838623.1|GW838623
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|110708386|gb|EE085867.1|EE085867
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|351012301|gb|FQ429986.1|FQ429986
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|26264357|gb|CA815420.1|CA815420
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|77584623|gb|DV221395.1|DV221395
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|110711535|gb|EE088128.1|EE088128
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|110712201|gb|EE089554.1|EE089554
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAA                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|352790430|gb|FQ478070.1|FQ478070
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|352798352|gb|FQ480377.1|FQ480377
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|351038339|gb|FQ461031.1|FQ461031
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
EST: gi|351048153|gb|FQ442123.1|FQ442123
EST:     CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAG                         GAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT
genomic: CCTGTTCTTCTTGTTCACGGCTTCGGCGCCTCCATTGCTCACTGGCGCAGgtttcttttg ... tctgtttcagGAATATTATGATACTGGCTGAAAGTCAGACTGTTTATGCCATTGACCTTCT