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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGCAGAAGCTATGACAACTGAGAAGCTGGGCATCAAGATTGAGAGGAATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttctgctctttttcttcttctttcttccatggaaaaaattgaggaaaacaacagaaaaagtggtgtattcatgtgtttataaatgctttagggttgtcgatgggctcatgtatgtgggttattgaatattgaacag

Basic information

species Vitis vinifera
transcript Vv18s0089g01210.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g01210.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G32060.1 (Glycine max), 5'ss of exon 1
-TGAGGGCAGAAGCTATGACAACTGAGAAGCTGGGCATCAAGATTGAGAGGAATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttctgctctttttcttcttctttcttccatggaaaaaattgaggaaaacaacagaaaaagtggtgtattcatgtgtttataaatgctttagggttgtcgatgggctcatgtatgtgggttattgaatattgaacag
  ||| |||  | |||     |  || || || |||||||||||||||||||| |||||||||||||  ||||||||||||||||| |     |||||||||||     | | ||  |||||||  |  |  |||  |        |    | ||             |  | | ||||| || ||  || |  || |  | |                                         
CAGAGAGCATGA-CTACTGTCATAGAAAAACTTGGCATCAAGATTGAGAGGAACCCTCCTGAGTCCAAGCTCACTCAACTGGGTGTTAGGCAATGGCCCAAgtaataaatatacttcttttctttattatatttctcttttttgtttccctgtaatttctgtttt---tttttttttcatatgatttcaattatttgaatggta----------------------------------------

upper sequence: Vv18s0089g01210.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G35580.1 (Glycine max), 5'ss of exon 1
TGAGGGCAGAAGCTATGACAACTGAGAAGCTGGGCATCAAGATTGAGAGGAATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttctgctctttttcttcttctttcttccatggaaaaaattgaggaaaacaacagaaaaagtggtgtattcatgtgtttataaatgctttagggttgtcgatgggctcatgtatgtgggttattgaatattgaacag
    | |     |||     |  || || |||||||| |||||||||||||| |||||||||||||  ||||||||||||||||| |     |||||||||||     | | ||  || | |||||   | |   ||   |    |      |     |    ||  |  | | | ||| || ||  || |  | ||| | | |                                       
CAGAGACCATGACTACTGTCATAGAAAAACTGGGCATTAAGATTGAGAGGAACCCTCCTGAGTCCAAGCTCACTCAACTGGGTGTTAGGCAATGGCCCAAgtaa----tatactacttcttttctttactatataataatatttctctttttagtttccttgtaatttcttttttccatttgatttcaattattctagtggtat---------------------------------------

upper sequence: Vv18s0089g01210.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G33050.1 (Glycine max), 5'ss of exon 1
-TGAGGGCAGAAGCTATGACAACTGAGAAGCTGGGCATCAAGATTGAGAGGAATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttctgctctttttcttcttctttcttccatggaaaaaattgaggaaaacaacagaaaaagtggtgtattcatgtgtttataaatgctttagggttgtcgatgggctcatgtatgtgggttattgaatattgaacag
  ||| | |  ||  | |   || |||||  |||||||||||||||||||||| ||||||||   ||  ||||||||||| ||||| |     ||||||||||||  |   | || || ||   | |||| ||    |    |   |||    |||    | | |      |  ||| || || ||     | ||| ||  |||| | ||                                  
GAGAGAGTATGAGTAACG-TGACAGAGAAATTGGGCATCAAGATTGAGAGGAACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAAgtatactactt-cttttctttgccctcttcctctttttcttacttttgccctaaattttatata------tacatttat-tgcttg-gtcttcttgagtattgtggttg----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32272514|gb|CD721673.1|CD721673
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|110391904|gb|EC956939.1|EC956939
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|30326143|gb|CD009405.1|CD009405
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|77577288|gb|DV217357.1|DV217357
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|30325422|gb|CD008684.1|CD008684
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|28961733|gb|CB340872.1|CB340872
EST:     AATCCTCCTGAGTCCAGACTCACTCGACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGGC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|26262220|gb|CA813283.1|CA813283
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|110379683|gb|EC944896.1|EC944896
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|30321531|gb|CD004793.1|CD004793
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|351016817|gb|FQ424244.1|FQ424244
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAGATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|28961890|gb|CB340959.1|CB340959
EST:     AATCCTCCTGAGTCCAGACTCACTCGACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGGC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|110418562|gb|EC984722.1|EC984722
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|110732097|gb|EE107084.1|EE107084
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|110727067|gb|EE103429.1|EE103429
EST:     TCCNNTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: TCC--TCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|110692332|gb|EE071458.1|EE071458
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
EST: gi|26264654|gb|CA815717.1|CA815717
EST:     AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAA                         GTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC
genomic: AATCCTCCTGAGTCCAGACTCACTCAACTGGGTGTCAAATCTTGGCCCAAgtatgttttc ... tattgaacagGTGGGGGTGTGAACCAAGCAAATTCCCATGGACGTTCACAACCAAAGAGAC