Sequence
atgc intronic sequence ATGC exonic sequenceTTGAGGTTGAATCGTTGATAGGTTCGGATGGTGCGAAGAAGGCTATGGGACCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGgtaccttttacttttcagcttagtttggctgacccttttgccgaactggtttccttttttctttattagttattgaatttagatcaattaactgtgagat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0076g00330.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G09140.1 (Glycine max), 5'ss of exon 1
TTGAGGTTGAATCGTTGATAGGTTCGGATGGTGCGAAGAAGGCTATGGGACCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGgtaccttttacttttcagcttagtttg-gctgacccttttgccgaactggtttccttttttctttattagt-tattgaatttagatcaattaactgtgagat
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TTGAGGCGGACTCGGCGATGATAATGGACGGTGTGAAGAAAGCTATGGCTCCTGATAAACTTGCTGAACTTGCTCTTATGGATCCCAAGAGAGCTAAGAGgttctttttccttttaaaagaaattaatagtgataaattgaagttatttttgagtttgtgaccttaatcttgtcataaacttgatttaattttttatctt--
upper sequence: Vv18s0076g00330.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G43700.1 (Arabidopsis thaliana), 5'ss of exon 1
TTGAGGTTGAATCGTTGATAGGTTCGGATGGTGCGAAGAAG------GCTATGGGACCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGgtaccttttacttttcagcttagtttggctgacccttttgccgaactggtttccttttttctttattagttattgaatttagatcaattaactgtgagat
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------TAGCTTCTGTGAGTGGTAAAGATAGTGGGAAGAAGAATATGGGTATGGGTGGTGATAGACTTGCTGAGCTTGCTTTGCTTGATCCTAAAAGAGCTAAAAGgtatataatttagtgttgttt--tttacttaaagcttgtaacttttttgtgatttgattgaggtttgaaatagtgttttgtgatgggtttttgatag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110727015|gb|EE103324.1|EE103324EST: CCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAG GATTCTTGCAAATAGACAATCTGCTGCACGTTCAAAGGAGAGGAAAATACG
genomic: CCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGgtacctttta ... gcttgagcagGATTCTTGCAAATAGACAATCTGCTGCACGTTCAAAGGAGAGGAAAATACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAGGTTGAATCGTTGATAGGTTCGGATGGTGCGAAGAAGGCTATGGGACCTGATAGACTCGCAGAGCTTGCTTTGATCGATCCCAAGAGAGCTAAAAGgtaccttttacttttcagcttagtttggctgacccttttgccgaactggtttccttttttctttattagttattgaatttagatcaattaactgtgagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT