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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttgagctttaagcttgtatacatgaattgcagtcattttcttctggtgttatactaacaattttatttcttatag

Basic information

species Vitis vinifera
transcript Vv18s0076g00240.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 5'ss of exon 3
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttg-------------agctttaagcttgtatacatgaatt-gcagtcattttctt-----ctggtgttatactaaca---attttatttcttatag
 || || ||||| |||||||| ||||||||||||||||| || ||||||||||||||||| || | ||| ||  || ||||| | ||||| |||||  |||| | ||              ||||||    | | ||||||| |  |||    ||  | |     |||      |  |||||   ||||  ||| ||  ||
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTACTTCATATCACAGgtgcgtgctgtaattgtagtggctttagtaatatttacatgactgagcaagttttaacatgataactgagcaagttttaacatatatttattttgttgcag

upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 3
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttgagctttaagcttgtatacatgaattgcagtcattttcttctggtgttatactaacaattttatttc-ttatag
 || || ||||| |||||||| ||||||||||||||||| || ||||||||||||||||| || | ||| ||  || ||||| | ||||| |||||  |||| | || | | |     ||    ||  |||        |  |  ||  || ||  ||  |   ||||||||  ||  ||
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTACTTCATATCACAGgtgcgtgcggtattgtagtgc-cgcagtaatatttacattactgatcaagtttttaac--atgtttttattttgttgcag

upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 4
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttgagctttaagct---tgtatacatgaattgcagtcattttcttctggtgttatactaacaattttat-ttcttatag---
 || |||||||| ||||| || |||||| |||||||||| || ||||||||||||||||| || | ||| ||  || ||||| | || || |||||| ||||   ||| ||| ||      ||  |     |  |  |    |  | ||   || |   | |||||  ||| | ||  | | |   
CGGTCAACAAGGCTCATACCCAATTAAGCTGTTCTACACTTCAAACATGCCCATCATTCTGCATTCTGCACTGATTACCAACCTCTATTTCATATCCCAGgt--ctgaacttcaattccactgctttagcaagataaatctttaatgtttgtgtttagcattaacatgtttgtattgctttggcag

upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 3
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttgagctttaagcttgtatacatgaattgcagtcattttcttctggtgtta-tactaaca-attttatttc--ttatag
||| || ||||| |||||||| |||||| |||||||||| || |||||||||||||| || || | ||| ||  || ||||| | || ||||||||| ||||||        | |  |   || |   | |       || ||||    |||| | | ||||   |||||| | |  | | ||
TGGCCAGCAAGGCTCATATCCAATTAAGCTGTTCTACACTTCAAACATGCCCATCATCCTTCACTCTGCGCTGATTACCAACCTCTATTTTATATCCCAGgtacaca---cctcatttctaatgctgcagtaagttatatcttctgtatgtgtaactgctaatgtattttactgctatcacag

upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 3
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtac----ttgagctttaagcttgtatacatgaattgcagtcattttcttctggtgtta-tactaaca-attttatttc--ttatag
||| || ||||| |||||||| |||||| | |||||||| || ||||||||||||||||| || | ||| ||  || ||||| | || || |||||| ||||||     | |  |  ||   ||||    | | |         | | |    |||| | | || |   |||||||| |  | | ||
TGGCCAGCAAGGCTCATATCCAATTAAGCTATTCTACACTTCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTATTTCATATCCCAGgtacgcacctcatttccaatgctgta---gtaagtcatgtcttctgtgtgtatgtgtaaatgctgatgtattttattgctatcacag

upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 4
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttgagctttaagcttgtatacatgaattgcagtc-attttcttctggtgttatactaacaattttatttcttatag---
||| |||||||| ||||| || || ||||||||||| || ||||||||||| |||||||| || | ||| ||  || ||||| | || || |||||| |||||  || |||| ||  ||  |    |  ||| || |  || || |  ||   ||  |   || |      ||  ||| |   
TGGTCAACAAGGCTCATACCCAATCAAGTTGTTCTATACTTCCAACATGCCTATCATTCTGCACTCTGCACTAATTACCAACCTCTATTTCATATCCCAGgta--tgtgcttcaa--ttccagtgtttcattacaattgatcttttcatgaatttgcatggactaaaaatgtttctatggcag

upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S323_56V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttgagctttaa-gcttgtatacatgaattgcagt---cattttcttctggtgt-tatactaacaattttatttcttatag-----------------------------------------------------
||| |||||||| || |||||||| ||  | ||||||||||||||||||||||||||||| ||   ||| || || |||||| | ||||| || ||  ||||| ||    | |    ||||| | ||     | |||    || ||||||  |   |    | || |  | | | |  ||  |                                                      
TGGTCAACAAGGATCTTATCCTATCAAACTATTCTACACCTCCAACATGCCCATCATTCTTCAGAGTGCCCTCGTATCCAACTTGTACTTCATTTCACAGgtattttttttctgttacttgtcttcaatctatacagcttgcaatttctttagcaatgcgaagtatcgttgtcaatggtttcaactcattaacttcttggaattaattaaaattcaaaagacttgtcgtcttttcag

upper sequence: Vv18s0076g00240.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S114_48V6.1 (Physcomitrella patens), 5'ss of exon 4
TGGACAACAAGGTTCATATCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTACAATTTGCTCTTGTTTCCAACATTTACTTTATATCCTAGgtacttgagctttaagcttgtataca--tgaattgcagtcattttcttctggt-gttatactaacaattttatttcttatag----------
 || |||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||    || ||||| |||||| | ||||| || ||  |||| |     || |   |||||  ||    | |||   ||||  |  |||||   |   |    ||    ||  || |  | |          
CGGTCAACAAGGATCTTACCCTATTAAGTTGTTCTACACCTCCAACATGCCCATCATTCTCCAGAGCGCCCTTGTCTCCAACTTGTACTTCATTTCACAGgttcgcct-ctctgttcttgttgactgtcgcattcgtgtcaagtaattctgaaagacgtgtctactcacttgcttttgtttgtgtgttccag