1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAAAGAGATAATATCTAATCACTAGGGTTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGAgtaggtcttcacacgcacaccagttctgtttctatttgttacttttctttgaattcccatttgtataggttgaaagagcactcttttaatatgtgaaatttgtgtttgggtattgctaaataatgttaaaaatttcctgagtcttttgagttaaaaatgtgcag
species | Vitis vinifera |
transcript | Vv18s0072g00940.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCACCACCCATTGA ATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTCEST: gi|71857670|gb|DT006725.1|DT006725
genomic: GCCACCACCCATTGAgtaggtcttc ... aaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
EST: TTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGA ATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTCEST: gi|37185120|gb|CF604473.1|CF604473
genomic: TTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGAgtaggtcttc ... aaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
EST: TTGATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGA ATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
genomic: TTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGAgtaggtcttc ... aaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGAGATAATATCTAATCACTAGGGTTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGAgtaggtcttcacacgcacaccagttctgtttctatttgttacttttctttgaattcccatttgtataggttgaaagagcactcttttaatatgtgaaatttgtgtttgggtattgctaaataatgttaaaaatttcctgagtcttttgagttaaaaatgtgcag
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