Sequence
atgc intronic sequence ATGC exonic sequenceGAACGAGCAGTCCAGGCATCCCGAGTCGCGCGGTGACTTCACCATCTTGCTCAGTCACATTGTGCTCGGCTGCAAGTTCGTCTGCACTGCCGTTAATAAGgtctctctcgattgctttcgttttcttcttcttttttttcttttatgaggaaatgattttgttttcatgtctgtaagtttgttttttgaagttaaggagg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00770.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 2
GAACGAGCAGTCCAGGCATCCCGAGTCGCGCGGTGACTTCACCATCTTGCTCAGTCACATTGTGCTCGGCTGCAAGTTCGTCTGCACTGCCGTTAATAAGgt---ctctctcgattgctttcgttttcttcttcttttttttcttttatgaggaaatgattttgttttcatgtctgtaagtttgttttttgaagttaaggagg
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GAACGAGCAATCCAAGCACCCCGAGTCACGCGGCGATTTCACCATCTTGCTCAGTCACATTGTTCTCGGTTGCAAGTTCGTTTGTTCCGCTGTCAGCAAGgtacgctatccctactttgtgtgttttttatcgacaaatattaattgttagtattattaatcctttttcttttcttctcttttcgtcattagactaatct---
upper sequence: Vv18s0072g00770.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ18090 (Selaginella moellendorffii), 5'ss of exon 1
GAACGAGCAGTCCAGGCATCCCGAGTCGCGCGGTGACTTCACCATCTTGCTCAGTCACATTGTGCTCGGCTGCAAGTTCGTCTGCACTGCCGTTAATAAGgtctctctcgattgctttcgttttcttcttcttttttttcttttatgaggaaatgattttgttttcatgtctgtaagtttgttttttgaagttaaggagg
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CAACGAGCAGAGCAAGCATCCCGAGGCTCGCGGCGATCTCACCATTTTGCTCAGTCACATTGTTCTCGGATGTAAGTTCGTGTGCTCGGCAGTGAACAAGgtg---ggcgaaca-----gatttcttcctagcgattgcaatct----gggaatctttttccttttttgtttcag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|38516542|gb|CF983717.1|CF983717EST: TCAGTCACATTGTGCTCGGCTGCAAGTTCGTCTGCACTGCCGTTAATAAG GCGGGTCTTGCCAAACTGATTGGACTTGCTGGAGAGACCAATGTTCAG
genomic: TCAGTCACATTGTGCTCGGCTGCAAGTTCGTCTGCACTGCCGTTAATAAGgtctctctcg ... cacattgcagGCGGGTCTTGCCAAACTGATTGGACTTGCTGGAGAGACCAATGTTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACGAGCAGTCCAGGCATCCCGAGTCGCGCGGTGACTTCACCATCTTGCTCAGTCACATTGTGCTCGGCTGCAAGTTCGTCTGCACTGCCGTTAATAAGgtctctctcgattgctttcgttttcttcttcttttttttcttttatgaggaaatgattttgttttcatgtctgtaagtttgttttttgaagttaaggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat