1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTTTGGGATTTCATGGAGACCCGCAACATTGCCCAAAATCCTCGCCCCGTTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagtttttgcttttgccggtgcgtttagttgcccagaattttattttttgtctaaaatggaaaatgctattcagtcacccagtgcatcaaatttctac...
species | Vitis vinifera |
transcript | Vv18s0072g00300.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCACCACCGTATCCCTAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCAEST: gi|71861386|gb|DT010441.1|DT010441
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
EST: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGC-TTTGGGGTTGCCAAATGTGTGAAAGTTAATCEST: gi|77577615|gb|DV217549.1|DV217549
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATC
EST: TTCACCACCGTATCCCTAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCAEST: gi|110385632|gb|EC950176.1|EC950176
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
EST: TTCACCACCGTATCCCTAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTGGGATTTCATGGAGACCCGCAACATTGCCCAAAATCCTCGCCCCGTTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagtttttgcttttgccggtgcgtttagttgcccagaattttattttttgtctaaaatggaaaatgctattcagtcacccagtgcatcaaatttctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa