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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTCTTCCTTCTCTCTCTTGCTCTGGCCGCTGCTGgtaagtctactcttctctcgtctccgattggctagggtttttggcgcattttaacctcaatattgttgcttcatatgatcag

Basic information

species Vitis vinifera
transcript Vv18s0041g01900.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724096|gb|EE099626.1|EE099626
EST:     CTCTCTTGCTCTGGCCGCTGCTG                         ATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
genomic: CTCTCTTGCTCTGGCCGCTGCTGgtaagtctac ... atatgatcagATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
EST: gi|110686647|gb|EE064527.1|EE064527
EST:     TTCAGTCTTCCTTCTCTCTCTTGCTCTGGCCGCTGCTG                         ATCTTGGAAAACTGAAGTAAGGTGAAGGGAAGTGCTTCTTTGATCAGCAAT
genomic: TTCAGTCTTCCTTCTCTCTCTTGCTCTGGCCGCTGCTGgtaagtctac ... atatgatcagATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
EST: gi|110393931|gb|EC959520.1|EC959520
EST:     CAGTCTTCCTTCTCTATCTTGCTCTGGCCGCTGCTG                         ATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
genomic: CAGTCTTCCTTCTCTCTCTTGCTCTGGCCGCTGCTGgtaagtctac ... atatgatcagATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
EST: gi|161710388|gb|FC059006.1|FC059006
EST:     TCTTGCTCTGGCCGCTGCTG                         ATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
genomic: TCTTGCTCTGGCCGCTGCTGgtaagtctac ... atatgatcagATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
EST: gi|110728722|gb|EE104537.1|EE104537
EST:     CTCTTGCTCTGGCCGCTGCTG                         ATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
genomic: CTCTTGCTCTGGCCGCTGCTGgtaagtctac ... atatgatcagATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
EST: gi|110699668|gb|EE076870.1|EE076870
EST:     GTCTTCCTTCTCTCTCTTGCTCTGGCCGCTGCTG                         ATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
genomic: GTCTTCCTTCTCTCTCTTGCTCTGGCCGCTGCTGgtaagtctac ... atatgatcagATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
EST: gi|71890428|gb|DT039483.1|DT039483
EST:     GGCCGCTGCTG                         ATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT
genomic: GGCCGCTGCTGgtaagtctac ... atatgatcagATCTTGGAAAACTGAAGTAAGGTGAAGTGAAGTGCTTCTTTGATCAGCAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAGTCTTCCTTCTCTCTCTTGCTCTGGCCGCTGCTGgtaagtctactcttctctcgtctccgattggctagggtttttggcgcattttaacctcaatattgttgcttcatatgatcag

- - - - - - - - - - - - - - -  GCTGCT