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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCGCTTTCTTGAAAAAGCATTTTCCTGGTCTTGGTTCTTGTTGGATTGTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtatttttttatttccatcaagatagtcatcagctttgttcttgtttagattttttttttttacccttgttttctttctgccttttcttggtttgtttttgatctttgaattatttgaaacag

Basic information

species Vitis vinifera
transcript Vv18s0001g15330.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110731976|gb|EE106858.1|EE106858
EST:     GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTG                         GAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
genomic: GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtattt ... tttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
EST: gi|110387851|gb|EC952549.1|EC952549
EST:     GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTG                         GAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
genomic: GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtattt ... tttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
EST: gi|33403642|gb|CF209269.1|CF209269
EST:     GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTG                         GAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCTACT
genomic: GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtattt ... tttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
EST: gi|294966391|gb|GW839498.1|GW839498
EST:     GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTG                         GAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
genomic: GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtattt ... tttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
EST: gi|27755280|gb|CB036035.1|CB036035
EST:     GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTG                         GAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
genomic: GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtattt ... tttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
EST: gi|110374121|gb|EC938672.1|EC938672
EST:     GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTG                         GAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
genomic: GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtattt ... tttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
EST: gi|110699794|gb|EE077102.1|EE077102
EST:     GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTG                         GAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT
genomic: GTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtattt ... tttgaaacagGAAATGCTACCGCTCTGTTCCTCTTCTTGGCTCCACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGCGCTTTCTTGAAAAAGCATTTTCCTGGTCTTGGTTCTTGTTGGATTGTGAAGGATGGATGCTCATCATGCTCTTCATTTCACGTTTGGGATTTTTGgtgggtatttttttatttccatcaagatagtcatcagctttgttcttgtttagattttttttttttacccttgttttctttctgccttttcttggtttgtttttgatctttgaattatttgaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA