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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct...

Basic information

species Vitis vinifera
transcript Vv18s0001g13630.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 1
CTCTGCAA-AATCGAACACGA-GAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct
  |  |    | ||| ||| | |       | |||||||||||||||||||| || || |||||||||||||||||||| ||  ||||||| || ||||||||||||  |  ||   |  || | | ||||  |  |     | | || | | | |      ||            | | |                     
--CGACGGCGAGCGACCACCATGTCCTCCTCCACCTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctcccaatcttccccttcactttc--tcggggccagatctgatctgagatgaggttgacacacgacgcatgcaag--------------------

upper sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 5'ss of exon 1
-CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct---
        ||   || ||  ||| |  | |    ||||||||||||||||| || || |||||||||||||||||||| ||  |||||||  | ||||| |||||   | |   ||    | |  | |||      |   |   || | | || ||   ||   |||||   |  |   | |     | | |||  || |    
GGAGAAGGAAGAGGAGCA-AAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCATCTTCTCATgtaatctccgccatccc-tcttcctcttcccccgatcaagcgattaggtgtagaaagctccagtttttc--caatcaaagtcgccatctttttctttccccca

upper sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
-CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaag-----acctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct
 | |  | |  || | | |  |  |    | |||||||||||||| ||||| || || |||||||||||||||||||| || ||||| || || ||||||||||||     | | || |||   ||||   ||     ||  |||           |  ||   ||  ||  |   ||   ||   |    |  ||  | |     
CCACCTCCACCTCCACC-CATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcctag-----

upper sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 5'ss of exon 1
CTCTGCAAAATCGAACACGAGAAGAT-GACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaaga-cctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct
       ||  || |  |||  |  | | |    ||||||||||||||||| || || |||||||||||||||||||| || |||||||| || ||||| |||  |  ||    |    | |||  ||||| | | | |  | |  ||   ||      |      | |  || ||| || || |  ||| | ||  |  | 
-AACAGGAAGCCGGAGGCGAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttccccttcgaccatcctccttttccacttgctc-gctcatgcgattccgtactcaaagctctagttttttccggataaagtttggatttttcacc

upper sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 5'ss of exon 1
CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctgaactctaaccctaattttcgattcgt---tttg---gttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct
                     | |  | |    ||||||||||||||||| || || |||||||| ||||||||||| || |||||||| || ||||| |||  | || |    |  |  ||  | ||| | |||     | |   | ||  ||     ||  |   |||||||||| |     |   |  || |||||       
---------------------ATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGTTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgtcccgcttccccatactcctcttccactcgcacgctcgagcgattccgtacccgaagctctagtttttttttttcccgaatagagcttctgtttc------

upper sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 5'ss of exon 1
CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct------
  | |||  |   |    |||| |  | |  | ||||||||||||||||| || || |||||||||||||| |||||  | || || || || ||||| ||||      |  | |   | |    |    |   ||| |  ||| ||||  ||  |||  | |     |||   |  | |  |  ||      | |  |       
AGCGGCAGCAGTAAGGGGGAGATGTCGTCGGCGTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgta-----cgtgcgccgcctcctcgtcctcacgtgttatactttcggttgcattgtttctt-tccgaatttgagtggggaaaaggttggagccgatcccgtccttt

upper sequence: Vv18s0001g13630.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 5'ss of exon 1
CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct
                        |||    ||||||| ||||||||||| || |||||||| || ||| |||||||||| || || || || ||||| |||||| |     || |  ||    |  || | |||   ||    ||| |  ||   || | |                                      
------------------------ATGGACGCCTTCAGTGGCGATGAGACGGCGCCATTCTTTGGATTCATCGGCGCTGCCGCAGCTCTCGTCTTCTCTTgtaagccagattctttttcctctttgatctaatcgcaatg-cgatggatcaatcgattacag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110369523|gb|EC933686.1|EC933686
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110389501|gb|EC954343.1|EC954343
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110383540|gb|EC947918.1|EC947918
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110403249|gb|EC964653.1|EC964653
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|30135070|gb|CB920408.1|CB920408
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|26261663|gb|CA812726.1|CA812726
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|29783068|gb|CB348963.2|CB348963
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110704405|gb|EE081519.1|EE081519
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71867976|gb|DT017031.1|DT017031
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|77586905|gb|DV222602.1|DV222602
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110381300|gb|EC946624.1|EC946624
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71872511|gb|DT021566.1|DT021566
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|77587011|gb|DV222645.1|DV222645
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|22012673|gb|BQ797707.1|BQ797707
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110394256|gb|EC958927.1|EC958927
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|30306067|gb|CB982861.1|CB982861
EST:     CCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAACGAGCGGGGTTGGTGTGGCCTCCA
genomic: CCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71865504|gb|DT014559.1|DT014559
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|161717775|gb|FC068164.1|FC068164
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110393665|gb|EC959069.1|EC959069
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|77581801|gb|DV219856.1|DV219856
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71854795|gb|DT003850.1|DT003850
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|30130307|gb|CB915646.1|CB915646
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|77583874|gb|DV220974.1|DV220974
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|352785343|gb|FQ477557.1|FQ477557
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110379159|gb|EC944336.1|EC944336
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110383300|gb|EC947665.1|EC947665
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110400596|gb|EC967162.1|EC967162
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110380457|gb|EC945725.1|EC945725
EST:     CTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: CTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71874541|gb|DT023596.1|DT023596
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|77585328|gb|DV221756.1|DV221756
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110394339|gb|EC959137.1|EC959137
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71890776|gb|DT039831.1|DT039831
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|352781816|gb|FQ469114.1|FQ469114
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110401131|gb|EC967726.1|EC967726
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110710661|gb|EE087001.1|EE087001
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110368803|gb|EC932886.1|EC932886
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|22015292|gb|BQ800326.1|BQ800326
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71865757|gb|DT014812.1|DT014812
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71875386|gb|DT024441.1|DT024441
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|37190400|gb|CF609749.1|CF609749
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110419096|gb|EC985291.1|EC985291
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110702710|gb|EE078917.1|EE078917
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|71873694|gb|DT022749.1|DT022749
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|351025407|gb|FQ435099.1|FQ435099
EST:     TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
EST: gi|110370305|gb|EC929358.1|EC929358
EST:     TGCTCCATTCTTCGGCTTCCTTGGCGCTGCTGCCGCCCTTGTTTTCTCCT                         GTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA
genomic: TGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctg ... gggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGCAAAATCGAACACGAGAAGATGACTACCTTCAGCGGCGATGAGACTGCTCCATTCTTCGGCTTCCTCGGCGCTGCTGCCGCCCTTGTTTTCTCCTgtaagacctgaactctaaccctaattttcgattcgttttggttttggttttataattttctgtttttttttcttttcgaattattttttgtttggttgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC