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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACGCCTTCTGAAACCCTCAGAAGTTAGAAAAATTCTTAATAAAATTATACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctttattttttcggggtcaattattgttttttaatttatgtttcgtatgtgattgaattggatgatttcaggtgaattggatttggtcttttc...

Basic information

species Vitis vinifera
transcript Vv18s0001g13280.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712193|gb|EE089538.1|EE089538
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|349813259|gb|FQ411499.1|FQ411499
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|27585579|gb|CB008274.1|CB008274
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|110713521|gb|EE089516.1|EE089516
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|32246127|gb|CD711946.1|CD711946
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|110718275|gb|EE094924.1|EE094924
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|294965909|gb|GW839248.1|GW839248
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|349820159|gb|FQ404881.1|FQ404881
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|349807500|gb|FQ401493.1|FQ401493
EST:     TACATAAGCGGCGAATGATGGGCGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|110712714|gb|EE088002.1|EE088002
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|351013733|gb|FQ433885.1|FQ433885
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|71889960|gb|DT039015.1|DT039015
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|71883071|gb|DT032126.1|DT032126
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|349815412|gb|FQ400567.1|FQ400567
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: gi|71886496|gb|DT035551.1|DT035551
EST:     TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT                         GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGACGCCTTCTGAAACCCTCAGAAGTTAGAAAAATTCTTAATAAAATTATACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctttattttttcggggtcaattattgttttttaatttatgtttcgtatgtgattgaattggatgatttcaggtgaattggatttggtcttttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaattgga