1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATCCTTGGACTCCAACCATCTGCCCTCATCGACCACGTCGCTAAAATTGATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactccttctcttctacccgtttcttttagtttctctttttcacttctctctgtttggtggttttgcgttaatgttttcggttgttgctgggcaa...
species | Vitis vinifera |
transcript | Vv18s0001g12750.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|30125650|gb|CB910989.1|CB910989
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161708079|gb|FC056483.1|FC056483
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161714080|gb|FC064381.1|FC064381
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161716110|gb|FC069483.1|FC069483
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161710483|gb|FC060670.1|FC060670
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110718647|gb|EE095720.1|EE095720
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161707362|gb|FC055179.1|FC055179
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161714866|gb|FC063017.1|FC063017
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161711653|gb|FC059542.1|FC059542
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|71859911|gb|DT008966.1|DT008966
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110701299|gb|EE078705.1|EE078705
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110684947|gb|EE062806.1|EE062806
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110699416|gb|EE076394.1|EE076394
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|294966810|gb|GW837829.1|GW837829
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161708249|gb|FC057005.1|FC057005
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161709836|gb|FC058909.1|FC058909
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110718530|gb|EE095467.1|EE095467
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161717418|gb|FC067550.1|FC067550
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|37188269|gb|CF607618.1|CF607618
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110719756|gb|EE095160.1|EE095160
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110710884|gb|EE087453.1|EE087453
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161709889|gb|FC060207.1|FC060207
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|161705914|gb|FC055376.1|FC055376
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|30126585|gb|CB911924.1|CB911924
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110720579|gb|EE096626.1|EE096626
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|71868003|gb|DT017058.1|DT017058
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGCGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|352774042|gb|FQ474565.1|FQ474565
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCCTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATCEST: gi|110698651|gb|EE076389.1|EE076389
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
EST: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCG GTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
genomic: ATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactc ... ttctgattagGTTGCAATTGAAGACCTGGAGCATATCTTAAATGAGGTGAAGACCCACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCTTGGACTCCAACCATCTGCCCTCATCGACCACGTCGCTAAAATTGATTCGTCTTTGCTGGCTCAAATCCCCGGCGAGCGTGGTGGCTCGATTGCGgtccgcactccttctcttctacccgtttcttttagtttctctttttcacttctctctgtttggtggttttgcgttaatgttttcggttgttgctgggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc