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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTATGATGGGGTCGTCTCAGGTGATTCGGGACAGCTCCGTCTCCGTCGTCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttcttcttgcttcattctctcgtttgattgcgtagaaatcggaatatgagctaatcggaacttgctttcctttgatcttcccactgttttcccggcagccaaacggagcctgttttattgggcttttcttttctactttgtatatctgtttatggattgattttcttgtatcttcgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g12560.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 1
TAGTATGATGGGGTCGTCTCAGGTGATTCGGGACAGCTCCGTCTCCGTCGTCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttcttcttgcttcattctctcgtttgattgcgtagaaatcggaatatgagct-aatcggaacttgctttcctttgatcttcccactgttttcccggcagccaaacggagcctgttttattgggcttttcttttctactttgtatatctgtttatggattgattttcttgtatcttcgcag
 ||| || | || ||  | ||||  ||||| ||   |||| |||| ||| | ||||||||||| ||||| || |||||||| |||||||| |||||||||||| |  ||   ||  |    |  |    |  ||  |  | || || |  |   | || ||    ||| || |||   |  || ||   || |                                                                                             
CAGTGTGTTTGGTTCCACACAGGCCATTCGTGATTCCTCCATCTCTGTCTTTGCTTGTGTTCTAATCGTTGCTTTGGGTCCAATTCAGTTTGGTTTCACTgtaagaatcacttttttc---ttgcaaagtcaatgaca-aaaattcagtttggaaacttaaaaaaaacatgattttgatc-attttatgacag---------------------------------------------------------------------------------------------

upper sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G36950.1 (Glycine max), 5'ss of exon 1
-TAGTATGATGGGGTCGTCTCAGGTGATTCGGGACAGCTCCGTCTCCGTCGTCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttcttcttgcttcattctctcgtttgattgcgtagaaatcggaatatgagctaatcggaacttgctttcctttgatcttcccactgttttcccggcagccaaacggagcctgttttattgggcttttcttttctactttgtatatctgtttatggattgattttcttgtatcttcgcag
  ||| || | || ||  | ||||  ||||| ||   |||| |||| ||| | ||||||||||| ||||| || |||||||| |||||||| |||||||||||| |  |||  ||   |       ||  | ||      | | || ||||  | |   ||    ||  || |||    | || ||   ||                                                                                               
CCAGTGTGTTCGGTTCCACACAGGCCATTCGTGATTCCTCCATCTCTGTCTTTGCTTGTGTTCTAATCGTTGCTTTGGGTCCAATTCAGTTTGGTTTCACtgtaagaatctctttttcttgcaaagtcaat-gacaaaaaacatatgggaaacttaaaaaaaaaaaa--tgatttttgatcattttatgaca----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687404|gb|EE064795.1|EE064795
EST:     TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACT                         TCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA
genomic: TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttct ... atcttcgcagTCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA
EST: gi|110701968|gb|EE080148.1|EE080148
EST:     TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACT                         TCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA
genomic: TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttct ... atcttcgcagTCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA
EST: gi|110699858|gb|EE077237.1|EE077237
EST:     TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACT                         TCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA
genomic: TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttct ... atcttcgcagTCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA
EST: gi|110732428|gb|EE107716.1|EE107716
EST:     TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACT                         TCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA
genomic: TCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttct ... atcttcgcagTCTGGTTATTCTTCGCCTACGCAATCCGCCATCACCAAGGATCTCGGACTA