1 5' 3' | 2 5' 3' | 3 5' 3' |
ACCGCTTCGAGAGAAGCCAGTGTAACTTCTTCTGGTAATCAGACGGCACCACAACCAGTGGCACCAACGAAGAAGAAGCGGAATCTCCCTGGAACGCCAGgtaagataagaaaaccctaaattcaatgtaaatcttaggtaaattctttccctcccaatacgaagagagaagaccgtgttgtgtttggattttgcag
species | Vitis vinifera |
transcript | Vv18s0001g12220.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAACCAGTGGCACCAACGAAGAAGAAGCGGAATCTCCCTGGAACGCCAG ATCCGGATGCGGAGGTGATCGCTTTGTCACCCAAAACCCTAATGGCAACGA
genomic: ACAACCAGTGGCACCAACGAAGAAGAAGCGGAATCTCCCTGGAACGCCAGgtaagataag ... gattttgcagATCCGGATGCGGAGGTGATCGCTTTGTCACCCAAAACCCTAATGGCAACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGCTTCGAGAGAAGCCAGTGTAACTTCTTCTGGTAATCAGACGGCACCACAACCAGTGGCACCAACGAAGAAGAAGCGGAATCTCCCTGGAACGCCAGgtaagataagaaaaccctaaattcaatgtaaatcttaggtaaattctttccctcccaatacgaagagagaagaccgtgttgtgtttggattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC