Sequence
atgc intronic sequence ATGC exonic sequenceCTCGCAATGGGAACGCTCATTACGCTGCGTTTCATAACCTCAATGCTGGGGTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgtatgatttctaccactgctccatcctatattttttcttagcttcattgcgcagtttattatttgatttctcttcttactcagtcaattttttgggtgct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G07440.1 (Glycine max), 5'ss of exon 1
CTCGCAATGGGAACGCTCATTACGCTGCGTTTCATAACCTCAATGCTGGGGTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgta-tgatttctaccactgctccatcctatatt----ttttcttagcttcattgcgcagtttattatttga--tttctcttcttactcagtcaattttttgggtgct
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CTCGCAATGGAAATGCTCACTATGCTGCATTTCACAACCTCAATGCTGGTGTTGGCTTTCAGGCCCTCGTTTTGCCCGTTGCTTTTGCTTATCTTGGCTGgtaacttttcctagctgttcaccacgttacattacattttgcatatgttcaagttcaactgcactggtcaaaatttctgttgtgaaacagcatgcatttt-------
upper sequence: Vv18s0001g11300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G31880.1 (Glycine max), 5'ss of exon 2
CTCGCAATGGGAACGCTCATTACGCTGCGTTTCATAACCTCAATGCTGGGGTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgtatgatttc-taccactgctccatcctatattttttctta-gcttcattgcgcagtttattatttgatttctcttcttactcagtcaattttttgggtgct
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CTCGCAATGGAAATGCTCACTATGCTGCATTTCACAACCTCAATGCTGGTGTTGGCTTCCAGGCCCTCTTTTTGCCAGTTGCTTTTGCTTATCTTGGCTGgtaccttttcctagctattcaccacgttacattacattttgcatatggtcaaaatttctgttgtgaaacagcatgcctttttta-ttgatggcttccttgt-
upper sequence: Vv18s0001g11300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 1
CTCGCAATGGGAACGCTCATTACGCTGCGTTTCATAACCTCAATGCTGGGGTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgtatgatttc--taccactgctccatcctatattttttcttagcttcattgcgcagtttattatttgatttctcttcttactcagtcaattttttgggtgct--
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CTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCTCAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTGgtgcgtttgcgtttttcttgatttttccaataatcttttttcttgtttttg---agtttttt-cttgaactttgtgtttagtgtttcaagattatttttgtttaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713684|gb|FC062824.1|FC062824EST: GTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTG GAGTTGGGGAATACTTTCCTTAACCATAGCCTACTTTTGGCAACTTTATAC
genomic: GTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgtatgatttc ... gaaaatgcagGAGTTGGGGAATACTTTCCTTAACCATAGCCTACTTTTGGCAACTTTATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCGCAATGGGAACGCTCATTACGCTGCGTTTCATAACCTCAATGCTGGGGTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgtatgatttctaccactgctccatcctatattttttcttagcttcattgcgcagtttattatttgatttctcttcttactcagtcaattttttgggtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatc