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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTATGGTAACCTAGTCACCATTTTTAGTATTGATGGAGGTGGTATCAGGGGCATCATCCCGGCAACTATCCTTGCTCGCCTGGAAACACGACTTCAGgtagaaattatttaagattatgtgatgatcatttgtatataattaatctctatcgaagtagggttcttagagtgcttttctttaaaaatgatccctacac...

Basic information

species Vitis vinifera
transcript Vv18s0001g10970.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G03970.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTTTTAGTATTGATGGAGGTGGTATCAGGGGCATCATCCCGGCAACTATCCTTGCTCGCCTGGAAACACGACTTCAGgtagaaat-tatttaagattatgt-gatgatcatttgtatataattaatctctatcgaagtagggttcttagagtgcttttctttaaaaatgatccctacac
||| ||||| ||| ||||||| ||| | || || || |||||||||||||||||||| ||||| |||||||| ||||||  ||| ||| | | |||||||||||  || |   |    |||  |  |||  | ||  | ||  ||  ||    ||      ||  || || | ||  |          | | | ||  |   
AACCTATGGAAACTTAGTCACTATTCTCAGCATCGACGGAGGTGGTATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCGCAACTTCAGgtaggtatatgcatctatttacatcaatgggctttgatttaccat--ataggcatacgtacagttttttttgcgtattaaaaagaggcattaaaccaaatta

upper sequence: Vv18s0001g10970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G36240.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTTTTAGTATTGATGGAGGTGGTATCAGGGGCATCATCCCGGCAACTATCCTTGCTCGCCTGGAAACACGACTTCAGgtagaaattatttaagattatgtgatgatcatttgtatataattaatctctatcgaagtagggttcttagagtgcttttctttaaaaatgatccctacac-
||||||||| |||||||| |||||| |||| || ||||| |||||||| || ||||||||||| || || ||  ||| |  ||| ||| | |  |||||||||  ||  |  ||    ||  | || |  |  | |   |  |     ||||   || ||    || |  ||   |||| |    ||   | || |||   
AACTTATGGAAACCTAGTAACCATTCTTAGCATCGATGGGGGTGGTATTAGAGGCATCATCCCCGCTACCATTATTGATTTCCTTGAATCTCAGCTTCAGgtatgaac-acctacacctaattaattactaagtattgttgttcctcttctaattaattaatcatcatttagctattttttcattaacaaaaccatactaa

upper sequence: Vv18s0001g10970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G04130.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTTTTAGTATTGATGGAGGTGGTATCAGGGGCATCATCCCGGCAACTATCCTTGCTCGCCTGGAAACACGACTTCAGgtagaaat-tatttaagattatgtgatgatcatttgtatataattaatctctatcgaagt---agggttcttagagtgcttttctttaaaaatgatccctacac
||| ||||| ||  ||||||| ||| | || || || |||||||||||||||||||| ||||| |||||||| ||||||  ||| ||| | | |||||||||  | ||  || ||     || |||||    | ||| | ||  |||  ||||   | ||   |||| | | ||    | | | |  |       |   |    
AACCTATGGAAATTTAGTCACTATTCTCAGCATCGACGGAGGTGGTATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCCCAACTTCAGgtctatatgcatctatttacat-tgatg--tgtgtgtgtctatctaaattctaattatgtttaagggctttgagttaccatatatacatgcgcagttttttgg-