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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGACGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGTCTGGAATCTCAACTTCAGgtataaattatttaatatcatgtggatgatgtttgcacatatttcatctctatattctactgcatgtcaaagtagggttcttggagcgatttttctttaa...

Basic information

species Vitis vinifera
transcript Vv18s0001g10880.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10880.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G03970.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGACGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGTCTGGAATCTCAACTTCAGgtataaat---tatttaatatcat--gtggatgatgtttgcacatattt-catctctata--ttctactgcatgtcaaagtagggttcttggagcgatttttctttaa
||| ||||| ||| ||||||| ||||| || || || ||| |||||||||||||||| || || |||||||| |||||||  || ||| | ||||||||||||   ||    || || |  |||   |||    || ||   |||||   |||   || |  || |  ||| | | |||  || |   ||  | | | ||        
AACCTATGGAAACTTAGTCACTATTCTCAGCATCGACGGAGGTGGTATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCGCAACTTCAGgtaggtatatgcatctatttacatcaatgggctttgatttaccatataggcatacgtacagttttttttgcgtattaaaa-agaggcattaaaccaaatta-------

upper sequence: Vv18s0001g10880.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G36240.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGACGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGTCTGGAATCTCAACTTCAGgtataaattatttaatatcatgtggatgatgtttgcacatatttcatctcta-tattctactgcatgtcaaagtagggttcttggagcgatttttctttaa
||||||||| |||||||| ||||||||||| || |||||  ||||||| || |||||||| || || || ||  ||| ||  || |||||||| |||||||||| ||    |  |  | || |   |  |   |     | || |   |||| |    || |     |  |  ||   ||     | | |        |||
AACTTATGGAAACCTAGTAACCATTCTTAGCATCGATGGGGGTGGTATTAGAGGCATCATCCCCGCTACCATTATTGATTTCCTTGAATCTCAGCTTCAGgtatgaacacctacacctaat-taattactaagtattgttgttcctcttctaattaattaatcatcatttagctattttttcattaacaaaaccatactaa

upper sequence: Vv18s0001g10880.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G04130.1 (Glycine max), 5'ss of exon 1
AACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGACGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGTCTGGAATCTCAACTTCAGgtataaattatttaatatcatgtggatgatgtttgcacatatttcatctcta--tattctactgcatgtcaaagtagggttcttggagcgatttttctttaa
||| ||||| ||  ||||||| ||||| || || || ||| |||||||||||||||| || || |||||||| |||||||  || ||| | ||||||||||| || ||   |  || | |  | |||| ||| ||    ||| | |  ||||  |||  |   |    |  |  ||   |   |  |       || |||  
AACCTATGGAAATTTAGTCACTATTCTCAGCATCGACGGAGGTGGTATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCCCAACTTCAGgtctatatgcatctat-ttacattgatg-tgtgtgtgtctatctaaattctaattatgtttaagggctttgagttaccatatatacatgcgcagttttttgg