Sequence
atgc intronic sequence ATGC exonic sequenceGGGGAATAGAATCTCAGCCCCAAGATTGTTGAAGCTCACTCCTTTGGATTCGCATCTCGCTGGAGTAAACAATAAGTTCCGCGGTGCTCAGTTTTCGTGGgtatgtttgcaccttctctttctcatatttacgtttgctagtatttttttttatttttcttgttgccagcctgcggtttaatgtatttcactattcattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g10540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G04120.1 (Glycine max), 5'ss of exon 1
GGGGAATAGAATCTCAGCCCCAAGATTGTTGAAGCTCACTCCTTTGGATTCGCATCTCGCTGGAGTAAACAATAAGTTCCGCGGTGCTCAGTTTTCGTGGgtatgtttgcaccttctctttctcatatttacgtttgctagtatttttttttatttttcttgttgccagcctgcggtttaatgtatttcactattcattt------
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GGGGAATAGGATTGCTGCTCCCAGGTTGCTGAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCAAATAACAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtataaa---ttgaattcac-tgcttgcatt-gcctgttttgtttatttttgtttctgctcttatcttgcaaattaa-gaatcatgatattgatatcctgta
upper sequence: Vv18s0001g10540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G04290.1 (Glycine max), 5'ss of exon 1
GGGGAATAGAATCTCAGCCCCAAGATTGTTGAAGCTCACTCCTTTGGATTCGCATCTCGCTGGAGTAAACAATAAGTTCCGCGGTGCTCAGTTTTCGTGGgtatgtttgcaccttctctttctcatattta-cgtttgctagtatttttttttatttttcttgttgccagcctgcggtttaatgtatttcactattcattt-
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GGGGAATAGGATTGCTGCTCCCAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGgtaagtgtgaattgaattctctgcttacttggcggttttgcttatttttgtttctgctcttatcttgcaaattat--ttttgtttctcatgatattgatgtcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71868911|gb|DT017966.1|DT017966EST: CGCATCTCGCTGGAGTAAACAATAAGTTCCGCGGTGCTCAGTTTTCGTGG GTCACAGAGAATGGGAAGCAGGAGCGCCACCTGGTTGCCACAGTAGGAAAG
genomic: CGCATCTCGCTGGAGTAAACAATAAGTTCCGCGGTGCTCAGTTTTCGTGGgtatgtttgc ... aattccatagGTCACAGAGAATGGGAAGCAGGAGCGCCACCTGGTTGCCACAGTAGGAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGAATAGAATCTCAGCCCCAAGATTGTTGAAGCTCACTCCTTTGGATTCGCATCTCGCTGGAGTAAACAATAAGTTCCGCGGTGCTCAGTTTTCGTGGgtatgtttgcaccttctctttctcatatttacgtttgctagtatttttttttatttttcttgttgccagcctgcggtttaatgtatttcactattcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc