Sequence
atgc intronic sequence ATGC exonic sequenceTCTCCCTACCATTCGAACTGCAGTAAACAAAGCAGTGGCCAAAGAGAAACGCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGTATTGgcaagtcgttctccacattcctcctttttaatggatcttctgtttttcactacttttttaacttttttctggttactactgactgcctctgcaacttagg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g06840.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os11g02100.1 (Oryza sativa), 5'ss of exon 1
TCTCCCTACCATTCGAACTGCAGTAAACAAAGCAGTGGCCAAAGAGAAACGCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGTATTGgcaagtcgttctccacattcctcctttttaatggatcttctgtttttcactacttttttaacttttttctggttactactgactgcctctgcaacttagg
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----TCCACCATCCGAACAGCGGTGAGATCTGCCGTAGCAAAGGAGAACCGCATGGGTGCATCATTGCTCCGCCTCCACTTCCATGACTGCTTTGTCAATGAAAgtg----tccagaacctgt-------acagatactcaagtttttctcacttct--aagtatcaagtactaacc-ttcagtattctgacaatgcag-
upper sequence: Vv18s0001g06840.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os12g02060.1 (Oryza sativa), 5'ss of exon 1
------------------------------------------------------------------------------TCTCCCTACCATTCGAACTGCAGTAAACAAAGCAGTGGCCAAAGAGAAACGCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGTATTGgcaagtcgttctccacattcctcctttttaatggatcttctgtttttcactacttttttaacttttttctggttactactgactgcctctgcaacttagg
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CATTGCCTTGTTATTTGCTGCAAACTTGGTGTCAGCTCAGCTTAGCGCAAATTTCTATGACAAATCATGCCCTAATGCACTGCCCACCATCCGAATAGCCgtgagatctgccatcgcaagggagaaccgcatgggtgcatcattgctccgcctccacttccacgactgctttgtcaatgaaagt-gtcctgaacctgc----------agagatattcaaaattttctcacttct--aagtattacgtaataacc-ttcagtattctgacaatgcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352764357|gb|FQ471324.1|FQ471324EST: GCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGTATTG GGATGTGATGCTTCTATATTATTGGATGACACTGCAACCTTTACTGGAGAG
genomic: GCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGTATTGgcaagtcgtt ... aatttaacagGGATGTGATGCTTCTATATTATTGGATGACACTGCAACCTTTACTGGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCCCTACCATTCGAACTGCAGTAAACAAAGCAGTGGCCAAAGAGAAACGCATGGGGGCCTCATTGCTCCGCCTCCATTTCCATGATTGCTTCGTATTGgcaagtcgttctccacattcctcctttttaatggatcttctgtttttcactacttttttaacttttttctggttactactgactgcctctgcaacttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc