1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAACTTTCCGGCGGCTCACCGGCATCGCGCAGCGCCAGTGGGGGTTTCGGAGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttcttgaaaacgatgcgttttggccttgcttttcctgtaaatttcataaggcaattacaaagtattggtttttgatggcattggtgcaattttc...
species | Vitis vinifera |
transcript | Vv18s0001g06010.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|352773576|gb|FQ472358.1|FQ472358
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|352769737|gb|FQ468665.1|FQ468665
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|352768560|gb|FQ467516.1|FQ467516
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|352781488|gb|FQ468332.1|FQ468332
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGACTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|352781638|gb|FQ468936.1|FQ468936
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|352781598|gb|FQ468896.1|FQ468896
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|352776761|gb|FQ472648.1|FQ472648
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCAEST: gi|71873371|gb|DT022426.1|DT022426
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
EST: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAG GATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
genomic: AGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttct ... ctggttgtagGATGATATATTTTGGCGTTCTCAGTCAGCTCTTAGTCACTCAAGGAAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTTTCCGGCGGCTCACCGGCATCGCGCAGCGCCAGTGGGGGTTTCGGAGGCGGGGAAGTTTGGGTTTCGGTCGGCGGTGGCTTCGGTGCCGTTCCAGgtgattttcttgaaaacgatgcgttttggccttgcttttcctgtaaatttcataaggcaattacaaagtattggtttttgatggcattggtgcaattttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaagta