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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCTCTTTCTCTCTGTGGCAGCCATGTCGCACTTCGGACGATCCGGTCCTCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttccatttctttctcttaaatttccatctctctttgctctacatattctaatttcctccaattcttgatgttgttcaccag

Basic information

species Vitis vinifera
transcript Vv18s0001g05550.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g05550.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S397_41V6.1 (Physcomitrella patens), 5'ss of exon 1
CCGCTCTTTCTCTCTGTGGCAGCCATGTCGCACTTCGGACGATCCGGTCCTCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttccatttctttctc-ttaaatttccatctctctttgctctacatattctaatttcctccaattcttgatgttgttcaccag--------------
  | | ||  ||| ||  |||  ||||||||| |||||  |  | |||||||||||||||||||| ||||| ||  | || || |||||||| ||||||||||  |    ||||||  |  |     | ||  | | |   ||||  | |   |    |  | | | | |||| || | |||    |              
GTGGTATTCGTCTTTGAAGCAAGCATGTCGCATTTCGGGAGGGCTGGTCCTCCGGACATCAGAGACACCTACTCGCTGCTTGTGCTCAACATTACTTTCCgtacgtgatttttcttgttagtcgtgctcccccccccccccgctcccctttcgcgtcctctccctagtccttg-tgatattcctgtgaggctcgaagtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026523|gb|FQ428535.1|FQ428535
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|351015878|gb|FQ431833.1|FQ431833
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|32265216|gb|CD716805.1|CD716805
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|351056154|gb|FQ453616.1|FQ453616
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|110409912|gb|EC975586.1|EC975586
EST:     TCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|351027210|gb|FQ444459.1|FQ444459
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|351013557|gb|FQ425588.1|FQ425588
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|351026982|gb|FQ436635.1|FQ436635
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|349825188|gb|FQ415735.1|FQ415735
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|161720292|gb|FC070553.1|FC070553
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|351015736|gb|FQ431691.1|FQ431691
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|110733043|gb|EE108857.1|EE108857
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|349817238|gb|FQ405242.1|FQ405242
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|351039277|gb|FQ461144.1|FQ461144
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|294964425|gb|GW838228.1|GW838228
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|349809657|gb|FQ414548.1|FQ414548
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTCCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
EST: gi|110430375|gb|EC996928.1|EC996928
EST:     TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCC                         GCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG
genomic: TCCGGACATCAGAGATACCTATTCTTTACTCGTTCTCAACATCACTTTCCgtaatttcca ... tgttcaccagGCACCACCGCAGATGATCTGTTCCCGCTTTTCGACAAGTACGGGAAAGTCG