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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTTTCAAGTTAAAGCGGTAAATCTTGGAGGTTGGCTGGTTACAGAAGGTTGGATTAAGCCATCTCTCTTTGATGACATTCCCAACAAAGATTTCCTGgtttgtgctacatgactttactgcatgccctcctattcatagtccatttctcagtgatattgcatctcctctaatatgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g05030.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720961|gb|FC070683.1|FC070683
EST:     GTTGGATTAAGCCATCTCTCTTTGATGGCATTCCCAACAAAGATTTCCTG                         GATGGAACTGAACTCCAGTTCAAGTCAGTAACAATTGGGAAGTATCTCTGC
genomic: GTTGGATTAAGCCATCTCTCTTTGATGACATTCCCAACAAAGATTTCCTGgtttgtgcta ... taatatgcagGATGGAACTGAACTCCAGTTCAAGTCAGTAACAATTGGGAAGTATCTCTGC
EST: gi|37183912|gb|CF603266.1|CF603266
EST:     GTTGGATTAAGCCATCTCTCTTTGATGACATTCCCAACAAAGATTTCCTG                         GATGGAACTGAACTCCAGTTCAAGTCAGTAACAATTGGGAAGTATCTCTGC
genomic: GTTGGATTAAGCCATCTCTCTTTGATGACATTCCCAACAAAGATTTCCTGgtttgtgcta ... taatatgcagGATGGAACTGAACTCCAGTTCAAGTCAGTAACAATTGGGAAGTATCTCTGC