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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTCTAAACCCATTCTAGGGTTTCGTCTCTCTACTTCCTCCCCAATTCTCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttctcttgccctacttttgcttcacttgtcaaaaccattcaaatgttttattttgatttttgtgttgattattatactaaggatatggagtttc...

Basic information

species Vitis vinifera
transcript Vv18s0001g04190.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877378|gb|DT026433.1|DT026433
EST:     TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
EST: gi|30321678|gb|CD004940.1|CD004940
EST:     TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
EST: gi|71870286|gb|DT019341.1|DT019341
EST:     TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAACAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
EST: gi|71870785|gb|DT019840.1|DT019840
EST:     TCAGACGTTTCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
EST: gi|71856675|gb|DT005730.1|DT005730
EST:     TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
EST: gi|71869405|gb|DT018460.1|DT018460
EST:     TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
EST: gi|27581049|gb|CB003744.1|CB003744
EST:     TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
EST: gi|77585517|gb|DV221846.1|DV221846
EST:     TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTAT                         ACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT
genomic: TCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttct ... attttcttagACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCTCTAAACCCATTCTAGGGTTTCGTCTCTCTACTTCCTCCCCAATTCTCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATgtacgtttctcttgccctacttttgcttcacttgtcaaaaccattcaaatgttttattttgatttttgtgttgattattatactaaggatatggagtttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggata