1 5' 3' |
CGGCAACCACATCACCGCCAATCATCGCCGCCGCTCACCGCCGCCAGAGTCATTCACCAAGGCAACGCACCATGTCGAGgtaatttgtgtgtcttctcctttcttcttcttctttctataaatggattgagtggggatgtctgggagagccagagaaaagggatttggatctggaccca...
species | Vitis vinifera |
transcript | Vv18s0001g04060.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCTCACCGCCGCCAGAGTCATTCACCAAGGCAACGCACCATGTCGAG AAGGTAAAATTGTCTGGGGTTTCTTGCTTGCATTTAAAAACTCTTTTTCGAEST: gi|110386605|gb|EC951218.1|EC951218
genomic: GCCGCTCACCGCCGCCAGAGTCATTCACCAAGGCAACGCACCATGTCGAGgtaatttgtg ... tcttaagcagAAGGTAAAATTGTCTGGGGTTTCTTGCTTGCATTTAAAAACTCTTTTTCGA
EST: GCCGCTCACCGCCGCCAGAGTCATTCACCAAGGCAACGCACCATGTCGAG AAGGTAAAATTGTCTGGGGTTTCTTGCTTGCATTTAAAAACTCTTTTTCGA
genomic: GCCGCTCACCGCCGCCAGAGTCATTCACCAAGGCAACGCACCATGTCGAGgtaatttgtg ... tcttaagcagAAGGTAAAATTGTCTGGGGTTTCTTGCTTGCATTTAAAAACTCTTTTTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCAACCACATCACCGCCAATCATCGCCGCCGCTCACCGCCGCCAGAGTCATTCACCAAGGCAACGCACCATGTCGAGgtaatttgtgtgtcttctcctttcttcttcttctttctataaatggattgagtggggatgtctgggagagccagagaaaagggatttggatctggaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa