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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGgtacactgcgccccacatccccccacccccctattaatagacatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcag

Basic information

species Vitis vinifera
transcript Vv18s0001g03910.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g03910.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g36480.1 (Oryza sativa), 5'ss of exon 1
CGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGgtacactgcgccccacatccccccacccccctattaatagacatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcag
|| |||||||| ||||||   || || ||||  || |||||||||||||||||| | |||||||| || || |||||||||||||| || |||||||| ||||    |       ||| |   ||  |   | | || | ||||         | |   |||  ||    |||  |||  |  || ||||  |||||    ||   || | |  | |   ||        
CGCATCATCGTCACCACCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCCTCCCGTCCCATGTCGACGCCGAGCTCGCCAACGCCGATGgtaa--cgtatttaccattcattcatgcatgtgtaaa-acacat---------tttaccgttcatgcgaatatgtatgtactgagttgagt-tctgactcgatcgaacaaat--gctcatcag-------

upper sequence: Vv18s0001g03910.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g36500.1 (Oryza sativa), 5'ss of exon 1
CGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGgtacactgcgccccacatccccccacccccctattaatagacatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcag
|| |||||||| ||||||   || || ||||  || |||||||||||||||||| | ||| |||| || || |||||||||||||| || |||||||| ||||   |        ||| |   ||  |    |  |      |    |||    | | ||| | |    | |       |   | |||   ||| |                                  
CGCATCATCGTCACCACCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCTTCCCGTCCCATGTCGACGCCGAGCTCGCCAACGCCGATGgtaacgtatatttaccatgcgtgcatgcgtaaaacacattttaccgttcttgcgaatatgtatgtatactgactcgatcgaacaaatgctcatcag----------------------------------

upper sequence: Vv18s0001g03910.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g53130.1 (Oryza sativa), 5'ss of exon 1
CGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGgtacactgcgccccacatccccccacccccctattaatagacatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcag
|| ||||||||  |  ||   || || || || || |||||||||   |||||| | |||||||| || ||||||||||||||||| || || ||||||||||     |   ||| |||  ||     | |    | |  ||  ||| | |  | ||   | ||||   |  ||| | |                       ||||  | |||||| | |  || ||   
CGCATCATCGTCGCGTCCAGCGAGTCGGAGAGCTACTACCATTACCGCGACAACCGCGTCCTCCCGTCTCACGTCGACGCCGAGCTCGCCAATGCCGAAGgtaattaaccaaccatatcttcctcgaacgc----actgcacgagacacacattgttgcatctttgtgatcttaacttgt---------------------gtgttttttttttggattatgtgcag---

upper sequence: Vv18s0001g03910.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G568636_T01 (Zea mays), 5'ss of exon 1
CGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGgtacactgcgccccacatccccccacccccctattaat-agacatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcag
|| |||||||| ||| ||   || || |||| ||| ||||||| |||||||||| | ||||| || || ||||||||||||||||| || ||||| |||||||    ||    ||  |      |      || || | |  ||  |      || | | |  |||| | ||  |||||   ||  |                                            
CGCATCATCGTCACCCCCGCCGAGTCCGACAATTACTACCATTTCAAGGACAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCAGAAGgtaattagcagttcatgttt----aatttattactactcaagcaaaaaaaatgatgtct-gactttgctattgcaaatgattgagcag-------------------------------------------

upper sequence: Vv18s0001g03910.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G076723_T01 (Zea mays), 5'ss of exon 1
CGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGgtacactgcgccccacatccccccacccccctattaatag--acatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcag
|| ||| |||| ||| ||   || || ||||  || |||||||||||||||||| | ||||| || || ||||||||||||||||| || ||||| || ||||    | |                |  |  ||    ||  |    |        |    | ||||| | ||     ||    | ||  ||                                        
CGCATCGTCGTCACCCCCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCTGAGGgtaactagtgtttgtttgtttgtttactacggatcggaagcaaagcaagcaagcgaaacgggattttgatcttgctgctgcaaaatgagcag----------------------------------------