Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAAGGCGATTCCAAGTCGACTAAGAGCAGATTATCGGCCTTGTTTTGGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAGgcacttatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os11g06820.1 (Oryza sativa), 5'ss of exon 1
GGAAGAAGGCGATTCCAAGTCG-ACTAAGAGCAGATTATCGGCCTTGTTTTGGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAGgcact-tatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtag
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-GGCGGCGTCGGGCAGGCGGCGCGGCAAGCTCGCCGTCTCCAGCCTCTTCTGGCACGGCGGCTCCGTCTACGACGCCTGGTTCAGCTGCGCCTCCAACCAGgttcaatccgtcgtcatatgacatgacatgacactc-tcatggcgat-cactacgatcgatcttgacgtcatcaatggcgtgattctgtgcag-----------
upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 1
----------------------GGAAGAAGGCGATTCCAAGTCGACTAAGAGCAGATTATCGGCCTTGTTTTGGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAGgcacttatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtag
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GGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACCAGTGGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGgtttagctgtgcttctaatcaggcacttac----tcacactgctttgataattatgtgtatttttcccatattgaag------------------------------------------------
upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 1
----------------------GGAAGAAGGCGATTCCAAGTCGACTAAGAGCAGATTATCGGCCTTGTTTTGGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAGgcacttatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtag
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GGAATTACTTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCCACTACTAGCAAATTGTCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGgtttagctgtgcttctaatcaggcacttgctatccctgctttgattatctgtttttttttt---tttcctatagaagcaaatta-aaaccttcttttg--gtgtggcaattaag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965879|gb|GW837362.1|GW837362EST: GGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAG GTTGCCCAAGTGCTTCTCACTCTGCCCTACTCGTTTTCACAACTGGGGATG
genomic: GGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAGgcacttatgc ... tggaatgtagGTTGCCCAAGTGCTTCTCACACTGCCTTACTCGTTTTCACAACTGGGGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAAGGCGATTCCAAGTCGACTAAGAGCAGATTATCGGCCTTGTTTTGGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAGgcacttatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG