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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTATTCGGGTATGGGTCACTGATATGGAAAGCAGGGTTTGAATATGATGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacctcagtatctctcgctgtatctctccttgaattcattgtatttctatggttttgttttgggtgtcttgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g03150.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579621|gb|CB002316.1|CB002316
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|110371933|gb|EC936069.1|EC936069
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|71873170|gb|DT022225.1|DT022225
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|110709129|gb|EE084317.1|EE084317
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|110382676|gb|EC946993.1|EC946993
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|27580878|gb|CB003573.1|CB003573
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|30321569|gb|CD004831.1|CD004831
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|27580470|gb|CB003165.1|CB003165
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
EST: gi|27581639|gb|CB004334.1|CB004334
EST:     TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAG                         GTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT
genomic: TGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGgtctgcacct ... tgtcttgcagGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACAT