Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAAGACGCTCCCACAGCATTTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttctctctctaaccctttctcttctatttcaccttttctcattgactcagaaaccctaatttgtccgttccaaatcaacag

Basic information

species Vitis vinifera
transcript Vv18s0001g02260.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025252|gb|FQ434265.1|FQ434265
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351043059|gb|FQ443901.1|FQ443901
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351036035|gb|FQ463880.1|FQ463880
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351042763|gb|FQ431241.1|FQ431241
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351046593|gb|FQ453209.1|FQ453209
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|33406790|gb|CF212417.1|CF212417
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|110399653|gb|EC966170.1|EC966170
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351015363|gb|FQ446242.1|FQ446242
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATATAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349832596|gb|FQ421954.1|FQ421954
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGGTGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351045652|gb|FQ440837.1|FQ440837
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349813662|gb|FQ413896.1|FQ413896
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351048930|gb|FQ449773.1|FQ449773
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACGATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|26257297|gb|CA808360.1|CA808360
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351054655|gb|FQ456852.1|FQ456852
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATAGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351025704|gb|FQ426718.1|FQ426718
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351018791|gb|FQ425693.1|FQ425693
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349809085|gb|FQ398085.1|FQ398085
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGTCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349815197|gb|FQ400352.1|FQ400352
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349829265|gb|FQ419797.1|FQ419797
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACGATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349829602|gb|FQ421120.1|FQ421120
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351037207|gb|FQ457040.1|FQ457040
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATATAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|110689722|gb|EE066205.1|EE066205
EST:     ATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: ATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349829652|gb|FQ421170.1|FQ421170
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349808570|gb|FQ405714.1|FQ405714
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351045223|gb|FQ451671.1|FQ451671
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATGCAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349832955|gb|FQ423077.1|FQ423077
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACGATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351018701|gb|FQ425603.1|FQ425603
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349813934|gb|FQ414168.1|FQ414168
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|77578611|gb|DV218095.1|DV218095
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|110423854|gb|EC990205.1|EC990205
EST:     AGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: AGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351029247|gb|FQ435447.1|FQ435447
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|110715271|gb|EE093128.1|EE093128
EST:     CTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: CTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|71859023|gb|DT008078.1|DT008078
EST:     AGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: AGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|351031280|gb|FQ445305.1|FQ445305
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|294966117|gb|GW837484.1|GW837484
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|161706889|gb|FC056789.1|FC056789
EST:     GGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: GGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|349822039|gb|FQ408368.1|FQ408368
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAATACAATGGCAGTGCGCTAATCGTCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
EST: gi|161720329|gb|FC071182.1|FC071182
EST:     TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCG                         ATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC
genomic: TTTAGTTTGGCTCTCGGAACTCAGTCGCATATTCATCGTCACCGATGTCGgtatggtttc ... aaatcaacagATCTTCGAGTACAATGGCAGTGCGCTAATCGCCATGGTTGGCAAGAACTGC