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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagtttttctgattttctcgtttttttagatgagaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g01770.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 1
GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagtttttctgattttctcgtttttttagatgagaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag
 ||||||||||||||||| ||||| ||| || || | |||||||| ||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||      |  |||| |  |  || ||    |     || || | ||| | ||        |||    |||   |||  | ||  ||  | |      
AATCAACGAGGACGAGTTCCACAAGATTTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCTGACCCCGACAACGATGTCTACGACTTCAGAGAGgttctacacttcgattctacctcttcttcttctt----ttttgttgttgttcaa------cttttcaccgttgagttgaatctttgttcgtag------

upper sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G09200.1 (Glycine max), 5'ss of exon 1
GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagtttttctgattttctcgtttttttagatgagaattg--tgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag
 ||||||||||||||||| ||||| ||  || || | |||||||| ||||||||| | ||||| || || || || |||||||||||||| ||||||||||||  |    || ||  |  |    ||  |    |    |   |  | ||          ||  |||    |||   || |   |  || || | | ||||
AATCAACGAGGACGAGTTCCACAAGATCTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCCGACCCCGACAACGATGTCTACGATTTCAGAGAGgtttctaaccctaataataccacgcttcgaatccatgcatacctcttcttttctttgttcaacttttcaccgttgagttttgaatctttgttcgttcgtag

upper sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ25581 (Selaginella moellendorffii), 5'ss of exon 1
GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagttttt--ctgattttctc-gtttttttagatgagaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag
||||||||||||||||||||||||||| ||| |    || || |||||||||||| | |||   || ||||| ||  || | || || || |||||||| || |||||    ||| | ||| | |  ||  |      |||| |  || |                                                    
GATCAACGAGGACGAGTTTCACAAAATCAGCCTCCACGAGTGTGATTTCTTCATTCGAAAGGTACCCGATCCTGACGACAACGTATATGATTTCAGAGAAgtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatctttcag-------------------------------------------------

upper sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ22312 (Selaginella moellendorffii), 5'ss of exon 1
GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagtttttctgattttctcgtttttttagatga--gaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag
||||||||||||||||||||||||||| ||| |    || || |||||||||||| | |||   || ||||| ||  || | || || || |||||||| || |||||        |  ||| |   || | ||   |||| |  || |                                                    
GATCAACGAGGACGAGTTTCACAAAATCAGCCTCCACGAGTGTGATTTCTTCATTCGAAAGGTACCCGATCCTGACGACAACGTGTATGATTTCAGAGAAgtaagtttaaagctggtgttcgctaccttcgttggctgaatggatctttcag-------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826810|gb|FQ418901.1|FQ418901
EST:     TCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAG                         ATGTATGTTACTCCTCCGGACACTGATGTGTACGCCATTCCAAGGGTTCTT
genomic: TCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagttttt ... ttggttgtagATGTATGTTACTCCTCCGGACACTGATGTGTACGCCATTCCAAGGGTTCTT
EST: gi|349824926|gb|FQ406465.1|FQ406465
EST:     TCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAG                         ATGTATGTTACTCCTCCGGACACTGATGTGTACGCCATTCCAAGGGTTCTT
genomic: TCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagttttt ... ttggttgtagATGTATGTTACTCCTCCGGACACTGATGTGTACGCCATTCCAAGGGTTCTT