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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTGGACTCGCAGAGTAGAGAGTTGCTGACTTGGGCTCTGGTGAAAGTGGCTCAGCCGGGTGACCGTGTGATTGCTCTGCATGTTCTTGGTCACAATGgtaagtatggtttgagtacgaatttatttatttatttttattttttttgtgtttcattttgtgggtgttcttgctttctgttcttttgggaggttttgatgggttgaagtgaagtttgtctgatttggag

Basic information

species Vitis vinifera
transcript Vv18s0001g01680.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G09620.1 (Glycine max), 5'ss of exon 1
AAGTTGGACTCGCAGAGTAGAGAGTTGCTGACTTGGGCTCTGGTGAAAGTGGCTCAGCCGGGTGACCGTGTGATTGCTCTGCATGTTCTTGGTCACAATGgtaagtatggtttgagtacgaatttatttatttatttttattttttttgtgtttcattttgtgggtgttcttgctttctgttcttttgggaggttttgatgggttgaagtgaagtttgtctgatttggag
||| ||||||| || || |  |||||||| |||||||||||| | |||||||||||||| |||||   |||| ||||||| |||||||||||  |  ||||||   |       |  || |   ||| | ||| |||  ||     ||      |||||| |  ||||| ||| | | ||||||| |   ||  || ||  | || |  |                    
AAGATGGACTCTCACAGCACCGAGTTGCTCACTTGGGCTCTGTTCAAAGTGGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGgtataaac------aaaaccatcatatgtgtttctttggatgaaacttacaca-cattttttaagtgtttttggtgt-tgttcttctaccagaattgga--gtttcatct--------------------

upper sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G24660.1 (Glycine max), 5'ss of exon 1
AAGTTGGACTCGCAGAGTAGAGAGTTGCTGACTTGGGCTCTGGTGAAAGTGGCTCAGCCGGGTGACCGTGTGATTGCTCTGCATGTTCTTGGTCACAATGgtaagtatggtttgagtacgaatttatttatttatttttattttttttgtgtttcattttgtgggtgttcttgctttctgttcttttgggaggttttgatgggttgaagtgaagtttgtctgatttggag
||| ||||||| || || |  |||||||| |||||||||||| | ||||||||||| || |||||   |||| ||||||| |||||||| ||  |  ||||||   |       |  || |    || | ||| |||  ||     || |||     | |  | ||||| ||| | | |||||||     |   || ||   |||  |                      
AAGATGGACTCCCACAGCACCGAGTTGCTCACTTGGGCTCTGTTCAAAGTGGCTCAACCCGGTGATGTTGTGCTTGCTCTTCATGTTCTCGGGAATGATGgtatcaac------aaaaccatcacatgtgtttctttggatgaaacttatgtgcacctcttcgagtgtttttggtgt-tgttcttggatcaaaattgga---gtttcatc--------------------