Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCAACAATCATAGCTGCTTCATCGTCATCTCCATCGATTTTCTCCCCAAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctcaccacagcatctgccatcatttctgatttctttcgttttcttttctctttttgtgaaattaacaatagaatatggttttgaatcag

Basic information

species Vitis vinifera
transcript Vv18s0001g00750.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32272198|gb|CD721357.1|CD721357
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|351030673|gb|FQ438511.1|FQ438511
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|30326615|gb|CD009877.1|CD009877
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|32248331|gb|CD714150.1|CD714150
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110367582|gb|EC931522.1|EC931522
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|30325841|gb|CD009103.1|CD009103
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110426950|gb|EC993379.1|EC993379
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110397725|gb|EC963577.1|EC963577
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|30327911|gb|CD011173.1|CD011173
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110411458|gb|EC977172.1|EC977172
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAATGTTTCTCCAAAAG                         ATAACGGGAGCGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|32267575|gb|CD716538.1|CD716538
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|30325217|gb|CD008479.1|CD008479
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110721872|gb|EE097605.1|EE097605
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|30322568|gb|CD005830.1|CD005830
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|32248255|gb|CD714074.1|CD714074
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110383972|gb|EC948381.1|EC948381
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|32249309|gb|CD715128.1|CD715128
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|18459473|gb|BM437751.1|BM437751
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|351023996|gb|FQ423419.1|FQ423419
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|32272050|gb|CD721209.1|CD721209
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|37186187|gb|CF605540.1|CF605540
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAC                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|351041477|gb|FQ431503.1|FQ431503
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110695208|gb|EE072961.1|EE072961
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|30325131|gb|CD008393.1|CD008393
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|110381520|gb|EC934681.1|EC934681
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
EST: gi|27579911|gb|CB002606.1|CB002606
EST:     AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAG                         ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG
genomic: AAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctc ... tttgaatcagATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGCAACAATCATAGCTGCTTCATCGTCATCTCCATCGATTTTCTCCCCAAGGAAAAGAGACTCACCAAGATTCCTTCGAGTCAACGTTTCTCCAAAAGgtaagatctcaccacagcatctgccatcatttctgatttctttcgttttcttttctctttttgtgaaattaacaatagaatatggttttgaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA