1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGGGAAGCTGAGGTTAAGCCTAAGAAGGCTGGCCCTGTACAGTGCTCCATCTGTAGCCAGAGGAGAGCCGCTCTTAAGCGCCCCAAAACCCTAGAGCAGgtacctctgcgaccctctcaatttcagttgttccgctgtttggttgctgagaaaacggaggaaaaagtaaagtaaatataagaaaatttctgattgtcgt...
species | Vitis vinifera |
transcript | Vv18s0001g00440.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTGTAGCCAGAGGAGAGCTGCTCTTAAGCGCCCCAAAACCCTAGAGCGG ATTTGCAGGGAGTGTTTCTATGCTGTTTTTGAGGAAGAGATCCATAGAGTAEST: gi|71860046|gb|DT009101.1|DT009101
genomic: TCTGTAGCCAGAGGAGAGCCGCTCTTAAGCGCCCCAAAACCCTAGAGCAGgtacctctgc ... tcaaatgaagATTTGCAGGGAGTGTTTCTATGCTGTTTTTGAGGAAGAGATCCATAGAGTA
EST: TCTGTAGCCAGAGGAGAGCCGCTCTTAAGCGCCCCAAAACCCTAGAGCAG ATTTGCAGGGAGTGTTTCTATGCTGTTTTTTGAGGAAGAGATCCATAGAGTEST: gi|30252892|gb|CB970443.1|CB970443
genomic: TCTGTAGCCAGAGGAGAGCCGCTCTTAAGCGCCCCAAAACCCTAGAGCAGgtacctctgc ... tcaaatgaagATTTGCAGGGAGTGTTTCTATGCTGTTTTT-GAGGAAGAGATCCATAGAGT
EST: TCTGTAGCCAGAGGAGAGCCGCTCTTAAGCGCCCCAAAACCCTAGAGCAG ATTTGCAGGGAGTGTTTCTATGCTGTTTTTGAGGAAGAGATCCATAGAGTA
genomic: TCTGTAGCCAGAGGAGAGCCGCTCTTAAGCGCCCCAAAACCCTAGAGCAGgtacctctgc ... tcaaatgaagATTTGCAGGGAGTGTTTCTATGCTGTTTTTGAGGAAGAGATCCATAGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGGAAGCTGAGGTTAAGCCTAAGAAGGCTGGCCCTGTACAGTGCTCCATCTGTAGCCAGAGGAGAGCCGCTCTTAAGCGCCCCAAAACCCTAGAGCAGgtacctctgcgaccctctcaatttcagttgttccgctgtttggttgctgagaaaacggaggaaaaagtaaagtaaatataagaaaatttctgattgtcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa