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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAAAGATTTCCAAGAAAAGCTCTCAACCCATTTCAGGCCTTTTCACCGCTCCTTCCAGTTCTGGGTGCGAGCGGTTGATATCTACACTGGCTACAAGgtccttttctgtgcaaaacaactcttttatctgatttgtctctctgaggattgcattggttatttatttatttatacatgtatttttgggttttttttttggattag

Basic information

species Vitis vinifera
transcript Vv17s0000g10260.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026649|gb|FQ436302.1|FQ436302
EST:     GCTCCTTCCAGTTCTGGGTGCGAGCGGTTGATATCTACACTGGCTACAAG                         GTGTTTCAACTTCGGGTGAGTTTCGTGAAGGATGTGAAGAAGCAGGAGGAA
genomic: GCTCCTTCCAGTTCTGGGTGCGAGCGGTTGATATCTACACTGGCTACAAGgtccttttct ... tttggattagGTGTTTCAACTTCGGGTGAGTTTCGTGAAGGATGTGAAGAAGCAGGAGGAA
EST: gi|351027374|gb|FQ444623.1|FQ444623
EST:     GCTCCTTCCAGTTCTGGGTGCGAGCGGTTGATATCTACACTGGCTACAAG                         GTGTTTCAACTTCGGGTGAGTTTCGTGAAGGATGTGAAGAAGCAGGAGGAA
genomic: GCTCCTTCCAGTTCTGGGTGCGAGCGGTTGATATCTACACTGGCTACAAGgtccttttct ... tttggattagGTGTTTCAACTTCGGGTGAGTTTCGTGAAGGATGTGAAGAAGCAGGAGGAA
EST: gi|351016236|gb|FQ446096.1|FQ446096
EST:     GCTCCTTCCAGTTCTGGGTGCGAGCGGTTGATATCTACACTGGCTACAAG                         GTGTTTCAACTTCGGGTGAGTTTCGTGAAGGATGTGAAGAAGCAGGAGGAA
genomic: GCTCCTTCCAGTTCTGGGTGCGAGCGGTTGATATCTACACTGGCTACAAGgtccttttct ... tttggattagGTGTTTCAACTTCGGGTGAGTTTCGTGAAGGATGTGAAGAAGCAGGAGGAA