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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTCTGACTGCGATCAAATCTCCGGTGCAATTCGTGAGCCGGACGTTTATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttcaattggattttgccttttttcttcttctttcttgaacttagggtgtttttttttttttttttggttttctgaatcttttcgatgagttttgattgtttttcttatatttgttgttttggtattggtttttttttctttggaattgaag

Basic information

species Vitis vinifera
transcript Vv17s0000g09790.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717443|gb|FC067556.1|FC067556
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAATAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|34548181|gb|CF516413.1|CF516413
EST:     CGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAATAT
genomic: CGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|161715129|gb|FC063975.1|FC063975
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGTATCGGCCACGGAAGTAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|34550534|gb|CF518752.1|CF518752
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|71863328|gb|DT012383.1|DT012383
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|77581731|gb|DV219814.1|DV219814
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAATAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|30137579|gb|CB922917.1|CB922917
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAATAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|161718052|gb|FC067587.1|FC067587
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|161714279|gb|FC064170.1|FC064170
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT
EST: gi|110700643|gb|EE077475.1|EE077475
EST:     ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTG                         GCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAATAT
genomic: ATATCGTCACGTCTGGCGGACTTCGCATTCCGGCTAACGCTTCCGTCTTGgtaacgttca ... ggaattgaagGCTTCGGTTTCACCGGTACTGGAGAATATTCTGGATCGGCCACGGAAGTAT