Sequence
atgc intronic sequence ATGC exonic sequenceTTGAGGAAGGGTCTGTGGTCTCCAGAGGAGGATGAGAAACTGTACAATTACATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGgtaattaatttctcttcttcaccttccacattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09080.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G09310.1 (Glycine max), 5'ss of exon 1
TTGAGGAAGGGTCTGTGGTCTCCAGAGGAGGATGAGAAACTGTACAATTACATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGgtaattaatttctcttcttcaccttccacattttcatctttcttggt------------------agttggtaaattgttttgatggtgatctttgtag
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TTGAGGAAAGGCTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACAAGATTTGGAGTTGGATGCTGGAGTTCGGTTCCAAAACTAGCTGgtaacaacttgtatattcttaatttcttctcttccattacttcaaacgaaaaaaacatgggagagagcttcttaactcattccatggtgaa-tttgcag
upper sequence: Vv17s0000g09080.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G36110.1 (Glycine max), 5'ss of exon 1
TTGAGGAAGGGTCTGTGGTCTCCAGAGGAGGATGAGAAACTGTACAATTACATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGgtaattaatttctcttcttcaccttccacatttt-------catctttcttggtagttggtaaattgttttgatggtgatctttgtag-----------------------------------------------------------
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CTAAGGAAAGGCTTATGGTCCCCCGAAGAAGATGAGAAGCTTTTCAACTACATAACCAGATTTGGCGTTGGCTGCTGGAGCTCCGTTCCCAAACAAGCCGgtaacgtattatattctacctcctttcctttttataagaaacaagttatagtgtattatttaaatttaattaacactcattctctcttctcattaaaagaaaagaaaagaaaagaaaagaaaaaccctcactttatgaatattgcag
upper sequence: Vv17s0000g09080.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G18830.1 (Glycine max), 5'ss of exon 1
TTGAGGAAGGGTCTGTGGTCTCCAGAGGAGGATGAGAAACTGTACAATTACATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGgtaattaatttctcttcttcaccttccacattttcatctttcttggtagttggt---aaattgttttgatggtgatctttgtag-----------------------------------------------------------------------------------
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TTAAGGAAAGGTTTATGGTCCCCCGAAGAAGATGAGAAGCTTTTCAACTACATAACCAGATTTGGCGTTGGCTGCTGGAGTTCCGTCCCCAAACAAGCCGgtaacatattatatattattattattattatttagcccttgtccggtgcttgattttggtccgtgactaagtttgactaggtagtggatgcttgatttcatttattttcttcaatatattctctcttcttattaaaagaaaataaactcactttatgaatattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710223|gb|FC058946.1|FC058946EST: CATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTG GTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGA
genomic: CATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGgtaattaatt ... atctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAGGAAGGGTCTGTGGTCTCCAGAGGAGGATGAGAAACTGTACAATTACATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGgtaattaatttctcttcttcaccttccacattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG