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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTTCTCCGGATCGGAGTCCGGGTCCTATCGACGTCCGATTCTGCTTCTTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgcaattttttgtttgtttgctaagaaaacgggggaaaatataatgaactgcttatatttttaattgttgggacttcagagaacacaaggcccc...

Basic information

species Vitis vinifera
transcript Vv17s0000g08840.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110727426|gb|EE104169.1|EE104169
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|110688621|gb|EE067381.1|EE067381
EST:     CTCTCTTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: CTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|351017129|gb|FQ424556.1|FQ424556
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|110389942|gb|EC954817.1|EC954817
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|110707540|gb|EE084053.1|EE084053
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|110728680|gb|EE104459.1|EE104459
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|349823849|gb|FQ415260.1|FQ415260
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|110702232|gb|EE080708.1|EE080708
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|110399716|gb|EC966237.1|EC966237
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|110385447|gb|EC949973.1|EC949973
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|351036157|gb|FQ464002.1|FQ464002
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GCGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
EST: gi|349823850|gb|FQ415261.1|FQ415261
EST:     TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAG                         GTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA
genomic: TTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgca ... tcaaatatagGTGCCACACTGGTGCAGAACTGTGGGGATAGTGAAATTGGGAAGGTTGTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGTTCTCCGGATCGGAGTCCGGGTCCTATCGACGTCCGATTCTGCTTCTTTAAAAAAGAACGTCGCCTCTATTCTGGATTCCCTCTCTCTTAAGCCAGgtactccgcaattttttgtttgtttgctaagaaaacgggggaaaatataatgaactgcttatatttttaattgttgggacttcagagaacacaaggcccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaca