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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGAGAAGTCGGGGAACTTGGTTCAGACGTTGCAGCTCGGGTTGTTGTTCGGTCTTTGGTACCTTTTCAATATCTACTTCAATATCTACAACAAGCAGgtttgtttttgtggtgtgtgttctgaaatttgagatttttcgtagcaaagcctctgatgaactgacgtaataccgccatgttaggcttaattgatgtgag...

Basic information

species Vitis vinifera
transcript Vv17s0000g08560.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G35730.1 (Glycine max), 5'ss of exon 1
GAGCGAGAAGTCGGGGAACTTGGTTC---AGACGTTGCAGCTCGGGTTGTTGTTCGGTCTTTGGTACCTTTTCAATATCTACTTCAATATCTACAACAAGCAGgtttgtttttgtggtgtgtgttctgaaatttgagatttttcgtagcaaagcctctgatgaactgacgtaataccgccatgttaggcttaat-tgatgtgag-
    | |      |  |||  | |     | ||  |  | |||||    ||||| || || |||||||| ||||| ||||||||||| ||||||||||| |||||  |  |      | |  | |||    ||  || |||| | |      || | | |   | ||  |    |||   ||| |   |  ||   |   |  | 
---TGCGCCCGTCGAAAACCCGCTCTTCAAAACTCTCGAACTCGGCGCCTTGTTTGGCCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAGgtccgaatactc--tctcagatctctcgttctagtttttgcctcaacttgcttttaaacgattgttgctgcaccataatgatttaccaaacacgcccttgga

upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G19250.1 (Glycine max), 5'ss of exon 1
GAGCGAGAAGTCGGGGAACT--TGGTTCAGACGTTGCAGCTCGGGTTGTTGTTCGGTCTTTGGTACCTTTTCAATATCTACTTCAATATCTACAACAAGCAGgtttg---tttttgtggtgtgtgttctgaa---atttgagatttttcgtagcaaagcctctgatgaactgacgtaataccgccatgttaggcttaattgatgtgag
 ||| |   ||||   | |   |  |  | ||  |  | |||||    ||||| ||  | |||||||| ||||| ||||||||||| ||||||||||| |||||      | |    | | | |  || ||    ||||   |      |    |||      ||| |  ||  | |  ||   ||| |||   |||  | |      
-AGC-ACCCGTCGAAAACCCGCTCTTCAAAACTCTCGAACTCGGCGCCTTGTTTGGCTTATGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAGgtcctaattctccccgctctctcatcagatcttatttagaaacaaatgagaaaaaaaaaacgattatttgctgaacgacgatcattttat-tttacctaac-----

upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ27053 (Selaginella moellendorffii), 5'ss of exon 1
GAGCGAGAAGTCGGGGAACT--TGGTTCAGACGTTGCAGCTCGGGTTGTTGTTCGGTCTTTGGTACCTTTTCAATATCTACTTCAATATCTACAACAAGCAGgtttgtttttgtggtgtgtgttctgaaatttgagatttttcgtagcaaagcctctgatgaactgacgtaataccgccatgttaggcttaattgatg-tgag
  || ||||  |||        || | |  ||  | ||||| || | | | |||||  | |||||||| ||||| ||||||||||| ||||| ||||||||||  |  |||  |     || ||||    |      |   | | | |    | | |  |   |   | |  |||   |    |||   |  |   |  | ||
--GCAAGAATCCGGCAGCGCGATGATGCGCACACTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgcattgtttctt--ctcgttttcttttctccaccttagctaggatcttctcttgttttctccatgcatgctactttctaactagaacttgtgatttctcag

upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ05868 (Selaginella moellendorffii), 5'ss of exon 1
GAGCGAGAAGTCGGGGAACT--TGGTTCAGACGTTGCAGCTCGGGTTGTTGTTCGGTCTTTGGTACCTTTTCAATATCTACTTCAATATCTACAACAAGCAGgtttgtttttgtggtgtgtgttctgaaatttgagatttttcgtagcaaagcctctgatgaactgacgtaataccgccatgttaggcttaattgatgtgag
  || ||||  |||        || | |  ||| | ||||| || | | | |||||  | |||||||| ||||| ||||||||||| ||||| ||||||||||  |  |||  |     || ||||    |     ||   | | | |    | | |  |   |   | |  |||   |    |||   | |||  |  |  
--GCAAGAATCCGGCAGCGCGATGATGCGCACGCTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgcattgtttctt--ctcgttttcttttctccaccatagctaggatcttttcttgttttctccatgcatgctactttctaactagaacttatttctcag--