Sequence
atgc intronic sequence ATGC exonic sequenceCATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatgtttccttacccccattttcaattgtgttgaattgtttttgtttgtttaggattaagatttcgttttctaacacctaagggtgtgtttgaatcaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 1
CATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatg-tttccttacccccattttcaattgtgttgaattgtttttgt---ttgtttaggattaagatttcgttttctaacacctaagggtgtgtttgaatcaga
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CACTCCGTGGAGCACTACACCCAGGTCAAGCTTAAGAAGCGCGGCTCCGACACCAAGTACCTGGCCACGGTCCTCGCCATTGGGACGGAGTGCGACATTGgtatgatttccccttctctgctgcaacctgcattgttctttccttctcaattgttgcaattgtagtacttatccaatgcttcctaagattgc--tccaatag--
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 1
CATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatgtttccttacccccattttcaattgtgttgaattgtttttgtttgtttaggattaagatttcgttttctaacacctaagggtgtgtttgaatcaga
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CATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGgtaacaaacaactaactccttgtcatttatttactttgaatttcatacaacgagaatagatgtatagaaatgtagaatcataagacaataacggtgaata
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 1
CATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatgtttccttacccccattttcaattgtgttgaattgtttttgtttgtttaggattaagatttcgttttctaacacctaagggtgtgtttgaatcaga-
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CATTCGGTAGAACACTATACACAGGTCAAGCTCAAGAAACGTGGCTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGACATTGgtaacaactatctccttgtcatttatttactttgaatttaatacaaggatgatagagtagtagaa-atttagaatcattagacaataacagtgaataagtg
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S176_87V6.1 (Physcomitrella patens), 5'ss of exon 2
CATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatgtttccttacccccattttcaattgtgttgaattgtttttgtttgttt--aggattaagatttcgttttctaacacctaagggtgtgtttgaatcaga-
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CACTCAGTGGAGCACCATACGCAGGTGAAGGTGAAGAAACGGGGATCGGATACAAAGTACTTGGCCACAGTGCTTGCGATTGGAACCGAATGCGATATAGgtcagttgctg---cccagtgcatgagcgtgtgcgaggggccgagtacggtacgaggacgtgcaggcggtcatgcggtctccgcaatacgagctgagtgtgacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71854817|gb|DT003872.1|DT003872EST: TGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTG CTATGCTAACGGTTAACGATGATGAGTTTTGGGAAGGCGTATCCCCTGTGG
genomic: TGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatgtttcc ... tgatgtgtagCTATGCTAACGGTTAACGATGATGAGTTTTGGGAAGGCGTATCCCCTGTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTCTGTGGAGCATTATACCCAGGTGAAGCTCAAGAAACGGGGTTCTGATGTCAAGTATTTGGCCACTGTGCTTGCCATTGGGACTGAGTGCGATATTGgtatgtttccttacccccattttcaattgtgttgaattgtttttgtttgtttaggattaagatttcgttttctaacacctaagggtgtgtttgaatcaga
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