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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAATGGCGATGGCTGCCTTTAGACGAGAAGGGAGGCGTTTCGCCCCTCTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctcctccatttcactgttttcgatttcgcttttctctcatgtttcgattgaacgctgataggggttctgttattctattgctttattttaagc...

Basic information

species Vitis vinifera
transcript Vv17s0000g07300.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579395|gb|CB002090.1|CB002090
EST:     GCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: GCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|161719749|gb|FC066095.1|FC066095
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|30134656|gb|CB919994.1|CB919994
EST:     CCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|110711663|gb|EE088400.1|EE088400
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|161719379|gb|FC068295.1|FC068295
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|27580503|gb|CB003198.1|CB003198
EST:     GCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: GCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|27579723|gb|CB002418.1|CB002418
EST:     TAATCACCCCCCGTCCTATCAG-CGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: TAATCACCCCCCGTCCTATC-GCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|161714443|gb|FC063863.1|FC063863
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|27581659|gb|CB004354.1|CB004354
EST:     GCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: GCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|71857753|gb|DT006808.1|DT006808
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|294965157|gb|GW836988.1|GW836988
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|71855283|gb|DT004338.1|DT004338
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|71859452|gb|DT008507.1|DT008507
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|71858291|gb|DT007346.1|DT007346
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|30321594|gb|CD004856.1|CD004856
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|110730013|gb|EE106609.1|EE106609
EST:     CCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|71855770|gb|DT004825.1|DT004825
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCG-TCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|71861543|gb|DT010598.1|DT010598
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|110686575|gb|EE064367.1|EE064367
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|32250032|gb|CD715851.1|CD715851
EST:     CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
EST: gi|30129869|gb|CB915208.1|CB915208
EST:     CCGATCCTCTCCCATTCCTGA                         GGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG
genomic: CCGATCCTCTCCCATTCCTGAgtatggtctc ... tggtggtcagGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCAATGGCGATGGCTGCCTTTAGACGAGAAGGGAGGCGTTTCGCCCCTCTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAgtatggtctcctccatttcactgttttcgatttcgcttttctctcatgtttcgattgaacgctgataggggttctgttattctattgctttattttaagc

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