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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGATGCCACTAAGACTTTGGTCACCTTGCATCAGCAGGGTCAACAAATTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggctttccttgttcaccaaccttcgttgtctgcttagagatgggctataacatgagaagtgtgttaaattagttaagaagcaaaaaattttggaaa...

Basic information

species Vitis vinifera
transcript Vv17s0000g06860.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719867|gb|EE095367.1|EE095367
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAAGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|110690969|gb|EE068535.1|EE068535
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|71889052|gb|DT038107.1|DT038107
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|56408671|gb|CX016923.1|CX016923
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|30330505|gb|CD013767.1|CD013767
EST:     GCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: GCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|27586846|gb|CB009541.1|CB009541
EST:     GCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: GCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|352773351|gb|FQ470938.1|FQ470938
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|161708562|gb|FC058334.1|FC058334
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|110700186|gb|EE077934.1|EE077934
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAAGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|110701129|gb|EE078388.1|EE078388
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAAGAATCTTCTCGAAGACCTGNAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|110430333|gb|EC996884.1|EC996884
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|110412633|gb|EC978388.1|EC978388
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|32269033|gb|CD718192.1|CD718192
EST:     TTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|110690996|gb|EE068594.1|EE068594
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|110410237|gb|EC975915.1|EC975915
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
EST: gi|71890575|gb|DT039630.1|DT039630
EST:     TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGG                         GGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG
genomic: TTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggcttt ... ttgatttcagGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGGATGCCACTAAGACTTTGGTCACCTTGCATCAGCAGGGTCAACAAATTACCCGGACCCACATGAATGCTGCTGACATTGATCATGATCTCAGTCGGgtatggctttccttgttcaccaaccttcgttgtctgcttagagatgggctataacatgagaagtgtgttaaattagttaagaagcaaaaaattttggaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat