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TACCGGCCGCCATGTATAGATTCGGAGTATGCAGAGAAATGAGGGGTAGAGTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGgtgtgtatcaagtattaactcctttctggtcccaagctccattgattttcagtcatggcgtgggaaaatctatggatttgttttgcttttgaataccaat...
species | Vitis vinifera |
transcript | Vv17s0000g05800.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTCCCCAAATTGCTGCTTTGAATTGGTTAAGTTCTCTCAGTCTCTCAAG ATCTATTCATAGTTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGGEST: gi|161717382|gb|FC069212.1|FC069212
genomic: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGgtgtgtatca ... tgtgtgacagATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGG
EST: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAG ATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGGEST: gi|71875127|gb|DT024182.1|DT024182
genomic: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGgtgtgtatca ... tgtgtgacagATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGG
EST: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAG ATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGGEST: gi|161714309|gb|FC062610.1|FC062610
genomic: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGgtgtgtatca ... tgtgtgacagATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGG
EST: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAG ATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGGEST: gi|110698054|gb|EE075624.1|EE075624
genomic: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGgtgtgtatca ... tgtgtgacagATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGG
EST: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAG ATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGG
genomic: GTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGgtgtgtatca ... tgtgtgacagATCTATTCATAATTTACCTTTTGCAACCATAGAAGTTGAAGAGATATCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCGGCCGCCATGTATAGATTCGGAGTATGCAGAGAAATGAGGGGTAGAGTTCCCCAAATTGCTGCTTTGAATTGGTTAGGTTCTCTCAGTCTCTCAAGgtgtgtatcaagtattaactcctttctggtcccaagctccattgattttcagtcatggcgtgggaaaatctatggatttgttttgcttttgaataccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataccaa