Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCGTTCATTGATGGCGGACACTGTGGTTTCGTTGGACAATATCAAAGCGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctctccgctctttattttcggtattttactttttgttttccttttttcttttcgtcgattcggcgtggtctacatattctatgattttctttca...

Basic information

species Vitis vinifera
transcript Vv17s0000g05260.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868945|gb|DT018000.1|DT018000
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|87585285|gb|DY474065.1|DY474065
EST:     CCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110400635|gb|EC967204.1|EC967204
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110397912|gb|EC963899.1|EC963899
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110422542|gb|EC988868.1|EC988868
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110693814|gb|EE070373.1|EE070373
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|351014702|gb|FQ437902.1|FQ437902
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|77580113|gb|DV218946.1|DV218946
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110364508|gb|EC927814.1|EC927814
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|33407199|gb|CF212826.1|CF212826
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|71869206|gb|DT018261.1|DT018261
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110707673|gb|EE084338.1|EE084338
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110414592|gb|EC980429.1|EC980429
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|30299727|gb|CB976521.1|CB976521
EST:     GTTCTGGAATGCCC-GANTTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: GTTCTGGAATGCCCAGA-TTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110732600|gb|EE108028.1|EE108028
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|87585814|gb|DY474377.1|DY474377
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110696068|gb|EE074805.1|EE074805
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAAGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
EST: gi|110414622|gb|EC980462.1|EC980462
EST:     CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATG                         AAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG
genomic: CGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctct ... tttcttgcagAAACTGCTTCGTGCTGCAGGGCTCTTTGCTGGATCCATCTTTTTGATGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTCGTTCATTGATGGCGGACACTGTGGTTTCGTTGGACAATATCAAAGCGTTCTGGAATGCCCAGATTCATGATGAGGAGAAATGGGCTCTCAACATGgtatctctctccgctctttattttcggtattttactttttgttttccttttttcttttcgtcgattcggcgtggtctacatattctatgattttctttca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA