1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGTTTTTCTTCACATCCATTGCCAGATCCATCACCAAGCTCAGCAGTTACGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgacccagatgccaccatttaccatttttttcgaatattgtgttttggaagtgtgtttcttatttctatgctaccatcccatttttcgggggaatt...
species | Vitis vinifera |
transcript | Vv17s0000g05070.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAG AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGEST: gi|110709853|gb|EE085677.1|EE085677
genomic: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgaccc ... gtttctgcagAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
EST: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAG AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGEST: gi|110711294|gb|EE087628.1|EE087628
genomic: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgaccc ... gtttctgcagAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
EST: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAG AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGEST: gi|110709374|gb|EE084778.1|EE084778
genomic: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgaccc ... gtttctgcagAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
EST: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAG AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGEST: gi|33407966|gb|CF213593.1|CF213593
genomic: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgaccc ... gtttctgcagAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
EST: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAG AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGEST: gi|110713068|gb|EE088664.1|EE088664
genomic: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgaccc ... gtttctgcagAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
EST: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAG AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGEST: gi|110712428|gb|EE090037.1|EE090037
genomic: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgaccc ... gtttctgcagAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
EST: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAG AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
genomic: CGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgaccc ... gtttctgcagAAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTTTTCTTCACATCCATTGCCAGATCCATCACCAAGCTCAGCAGTTACGCCATTTTGCTTGTGTTGTTGTTTTCTTGCTCCATTTTCACTTCTACAGgtgatgacccagatgccaccatttaccatttttttcgaatattgtgttttggaagtgtgtttcttatttctatgctaccatcccatttttcgggggaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggaa